U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX18229390: Endophytic bacteria from tomato
1 ILLUMINA (Illumina HiSeq 2500) run: 605,499 spots, 284.3M bases, 101.1Mb downloads

Design: Genomic DNA libraries were prepared using Nextera XT Library Prep Kit (Illumina, San Diego, USA) following the manufacturers protocol with the following modifications: two nanograms of DNA instead of one were used as input, and PCR elongation time was increased to 1 min from 30 seconds.
Submitted by: Centre of Biotechnology of Borj Cedria
Study: Whole genome sequencing of biocontrol bacteria
show Abstracthide Abstract
The goal of the project is to uncover genome sequences of bacteria that show biocontrol activity of plant pathogens. Bacteria were isolated from several plant species including Medicago truncatula, Solanum lycopersicum (tomato) and Solanum tuberosum (potato). Isolated bacteria fall into two different groups: Bacillus and Xanthomonas. We intend to do comparative genomics to find out differences and similarities in genomes of these bacteria.
Sample:
SAMN31677949 • SRS15725549 • All experiments • All runs
Library:
Name: H1F1
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 605,499 spots, 284.3M bases, 101.1Mb
Run# of Spots# of BasesSizePublished
SRR22252779605,499284.3M101.1Mb2022-11-10

ID:
25212630

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...