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DRX283053: Illumina NovaSeq 6000 paired end sequencing of SAMD00321365
1 ILLUMINA (Illumina NovaSeq 6000) run: 19.9M spots, 6G bases, 2.2Gb downloads

Submitted by: OIST
Study: Global biogeography and evolution of the invasive honey bee Varroa mites
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Since Varroa destructor switched from its original host, the Eastern honeybee, to the Western honeybee, it has successfully spread worldwide and is considered the most damaging pest in beekeeping. The high inbreeding combined with bottleneck following host switch led to the assumption that V. destructor invasive populations originated from two quasi-clonal strains. Yet, Varroa mites persist after 80 years of invasion and independently develop novel traits such as acaricide resistance. How can this specialist parasite evolve new traits despite an initial loss of genetic diversity? To identify the key demographic and genetic mechanisms behind Varroa invasive success, we took advantage of our Vdes_3.0 reference genome, and a unique Varroa mite collection started in 2016. We successfully sequenced the whole genome of >1500 mites from 61 countries/islands. These samples include all known Varroa species on different hosts - and with a sampling period spanning from 1989 to 2021.
Sample: Female unclassified Varroa on Apis cerana from Philippines: PHV616_1
SAMD00321365 • DRS275313 • All experiments • All runs
Library:
Name: PHV616_1_VspAc
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol:
Spot descriptor:
forward181  reverse

Runs: 1 run, 19.9M spots, 6G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
DRR29359719,941,4756G2.2Gb2023-01-15

ID:
26201322

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