Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX1059659: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Kentucky str. WAPHL_SAL-A00802 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 547.5M bases, 349.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Washington State Department of Health Public Health Laboratory

PRJNA183851 • SRP028334 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN03291631 • SRS961914 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Kentucky

Library:

Name: Salmonella enterica str. WAPHL_SAL-A00802 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Kentucky str. WAPHL_SAL-A00802.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 1.2M spots, 547.5M bases, 349.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR2064126	1,163,268	547.5M	349.1Mb	2015-06-16

ID:: 1536865

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