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SRX19628683: Nanopore sequencing of Campylobacter jejuni from chicken manure
1 OXFORD_NANOPORE (MinION) run: 26,781 spots, 181.8M bases, 147.4Mb downloads

Design: DNA extracted from bacterial culture and sequenced using MinION flow cell R10.4 with Ligation Sequencing Kit SQK-LSK112
Submitted by: Swiss Tropical and Public Health Institute
Study: Salmonella enterica subsp. enterica genome sequencing for One Health Surveillance in Palestine
PRJNA942086 • SRP426545 • All experiments • All runs
show Abstracthide Abstract
Surveillance of Antimicrobial Resistance in the two food-borne pathogens Salmonella enterica and Campylobacter jejuni in the West Bank, Palestine. A cross-sectional study was conducted in the white meat production chain using isolates from chicken manure, chicken meat sold in markets, and faeces of asymptomatic farm workers.
Sample: Salmonella enterica isolated from chicken manure
SAMN33677875 • SRS16998275 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Muenchen
Library:
Name: Salmonella_enterica_Chicken_manure_2_2021
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 26,781 spots, 181.8M bases, 147.4Mb
Run# of Spots# of BasesSizePublished
SRR2379661026,781181.8M147.4Mb2023-03-27

ID:
26926429

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