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SRX20519215: GSM7429040: Female_SoaRSoaR_RNA-seq_Rep2; Anopheles gambiae; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 14.9M spots, 2.2G bases, 793.6Mb downloads

External Id: GSM7429040_r1
Submitted by: Bioinformatics Core Facility, Institute of Molecular Biology (IMB)
Study: The sex-specific factor SOA establishes X chromosome dosage compensation in Anopheles mosquitos [SOAR-RNA-seq]
show Abstracthide Abstract
The Anopheles mosquito is one of thousands of species in which sex differences play a central role in their biology, as only females need a blood meal in order to produce eggs. Sex differentiation is regulated by sex chromosomes, but their presence creates a dosage imbalance between males (XY) and females (XX). Dosage compensation (DC) can re-equilibrate the expression of sex-chromosomal genes, but because DC mechanisms have only been fully characterized in a few model organisms, key questions about its evolutionary diversity and functional necessity remain unresolved. Here we report the discovery of a previously uncharacterized gene (SOA) as a master regulator of DC in the malaria mosquito Anopheles gambiae. Sex-specific alternative splicing prevents functional SOA protein expression in females. The male isoform encodes a DNA-binding protein that binds the promoters of active X chromosomal genes. Expressing male SOA is sufficient to induce DC in female cells. Male mosquitoes lacking SOA or female mosquitos ectopically expressing the male isoform exhibit X chromosome misregulation, which is compatible with viability but causes developmental delay. Thus, our molecular analysis of the first DC master regulator in a non-model organism elucidates the evolutionary steps leading to the establishment of a chromosome-specific fine-tuning mechanism. Overall design: Comparative gene expression profiling analysis of RNA-seq data for female pupae of wild-type and SOA-R knock-in genotype
Sample: Female_SoaRSoaR_RNA-seq_Rep2
SAMN35369586 • SRS17829164 • All experiments • All runs
Library:
Name: GSM7429040
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using Trizol (Fisher Scientific, Cat. No.15-596-026) and the Direct-zol RNA MicroPrep Kit (Zymo Research, Cat. No. R2062). NGS library prep was performed with Illumina's Stranded mRNA Prep Ligation Kit following Stranded mRNA Prep Ligation ReferenceGuide (June 2020) (Document # 1000000124518 v00).
Runs: 1 run, 14.9M spots, 2.2G bases, 793.6Mb
Run# of Spots# of BasesSizePublished
SRR2474192514,881,0602.2G793.6Mb2023-07-25

ID:
27942898

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