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SRX20519678: GSM7429035: SoaR_female_IgG_Rep1; Anopheles gambiae; OTHER
1 ILLUMINA (NextSeq 500) run: 10.7M spots, 1.6G bases, 600Mb downloads

External Id: GSM7429035_r1
Submitted by: Bioinformatics Core Facility, Institute of Molecular Biology (IMB)
Study: The sex-specific factor SOA establishes X chromosome dosage compensation in Anopheles mosquitos [SOAR-CUTnTag]
show Abstracthide Abstract
The Anopheles mosquito is one of thousands of species in which sex differences play a central role in their biology, as only females need a blood meal in order to produce eggs. Sex differentiation is regulated by sex chromosomes, but their presence creates a dosage imbalance between males (XY) and females (XX). Dosage compensation (DC) can re-equilibrate the expression of sex-chromosomal genes, but because DC mechanisms have only been fully characterized in a few model organisms, key questions about its evolutionary diversity and functional necessity remain unresolved. Here we report the discovery of a previously uncharacterized gene (SOA) as a master regulator of DC in the malaria mosquito Anopheles gambiae. Sex-specific alternative splicing prevents functional SOA protein expression in females. The male isoform encodes a DNA-binding protein that binds the promoters of active X chromosomal genes. Expressing male SOA is sufficient to induce DC in female cells. Male mosquitoes lacking SOA or female mosquitos ectopically expressing the male isoform exhibit X chromosome misregulation, which is compatible with viability but causes developmental delay. Thus, our molecular analysis of the first DC master regulator in a non-model organism elucidates the evolutionary steps leading to the establishment of a chromosome-specific fine-tuning mechanism. Overall design: CUT&Tag libraries generated from WT and SOA-R pupae are analyzed. Each group has two biological replicates (except for SOA-R female IgG with one replicate). The IgG antibody is a negative control for unspecific binding of the antibodies.
Sample: SoaR_female_IgG_Rep1
SAMN35369913 • SRS17829569 • All experiments • All runs
Library:
Name: GSM7429035
Instrument: NextSeq 500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: The experiment was performed with flash frozen tissues, which were homogenized in cold PBS and passed through a cell strainer. The cell suspension was counted and 0.4 Mio cells were used for each reaction. The libraries were generated according to the following protocol: dx.doi.org/10.17504/protocols.io.bcuhiwt6). Antibodies are listed with the respective samples. We used pA-Tn5 prepared by the IMB protein production core facilty. CUT&Tag libraries were amplified using NEBNext Ultra II Q5 Master Mix with standard protocols and 15 PCR cycles. Libraries were cleaned up using 1.3 volume Ampure XP beads and pooled together for paired-end sequencing.
Runs: 1 run, 10.7M spots, 1.6G bases, 600Mb
Run# of Spots# of BasesSizePublished
SRR2474245110,680,7921.6G600Mb2023-07-26

ID:
27943361

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