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SRX20733645: GSM7498269: Sterlet sturgeon scute 68mm, replicate one; Acipenser ruthenus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 62.9M spots, 3.1G bases, 1.7Gb downloads

External Id: GSM7498269_r1
Submitted by: Bronner, California Institute of Technology
Study: Ancient vertebrate dermal armor evolved from trunk neural crest
show Abstracthide Abstract
Bone is an evolutionary novelty of vertebrates, likely to have first emerged as part of ancestral dermal armor that consisted of osteogenic and odontogenic components. Whether these early vertebrate structures arose from mesoderm or neural crest cells has been a matter of considerable debate. To examine the developmental origin of the bony part of the dermal armor, we have performed in vivo lineage tracing in the sterlet sturgeon, a representative of non-teleost ray-finned fish that has retained an extensive postcranial dermal skeleton. The results definitively show that sterlet trunk neural crest cells give rise to osteoblasts of the scutes. Transcriptional profiling further reveals neural crest gene signature in sterlet scutes as well as bichir scales. Finally, histological and microCT analysis of ray-finned fish dermal armor show that their scales and scutes are formed by bone, dentin and hypermineralized covering tissues, in various combinations, that resemble those of the first armored vertebrates. Taken together, our results support a primitive skeletogenic role for the neural crest along the entire body axis, that was later progressively restricted to the cranial region during vertebrate evolution. Thus, the neural crest was a crucial evolutionary innovation driving the origin and diversification of dermal armor along the entire body axis. Overall design: To investigate the expression profiles of the dermal armor, we performed bulk RNA sequencing of sterlet sturgeon scutes, scales of the Senegal bichir, and zebrafish scales.
Sample: Sterlet sturgeon scute 68mm, replicate one
SAMN35816073 • SRS18024484 • All experiments • All runs
Library:
Name: GSM7498269
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNAqueous kit (Ambion), prepared according to the manufacturer's instructions. The libraries were built according to Illumina Standard Protocols.
Runs: 1 run, 62.9M spots, 3.1G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR2497646362,871,7143.1G1.7Gb2023-06-24

ID:
28164149

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