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SRX21234239: RNA-Seq of Colletotrichum gloeosporioides
1 BGISEQ (BGISEQ-500) run: 21.6M spots, 3.2G bases, 2.3Gb downloads

Design: The transcriptomic results showed that each sample produced an average of 6.46 Gb of data
Submitted by: Xinyang Agriculture and Forestry University
Study: The biocontrol mechanism of Coniochaeta velutina against Colletotrichum gloeosporioides was revealed based on transcriptome and metabolome
show Abstracthide Abstract
The high-throughput sequencing data submitted this time consisted of two groups: control and processing. There were 3 replicates per group. The transcriptomic results showed that each sample produced an average of 6.46 Gb of data. The average alignment rate of the samples to the reference genome was 91.00%, and 109 novel genes were predicted. A total of 15,310 expressed genes were detected in both groups of samples. Among them, 3,938 genes showed significant differential expression, with 2,093 up-regulated genes and 1,845 down-regulated genes. All differentially expressed genes were mainly enriched in the MAPK signaling pathway, antibiotic biosynthesis pathway, amino acid metabolism pathway, carbon metabolism pathway, and peroxidase pathway.
Sample: Fungi
SAMN36823224 • SRS18489297 • All experiments • All runs
Library:
Name: T1
Instrument: BGISEQ-500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: SINGLE
Runs: 1 run, 21.6M spots, 3.2G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR2550341721,643,8593.2G2.3Gb2023-08-03

ID:
28670864

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