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SRX21471141: RNA seq of Lepeophtheirus salmonis adult female labial gland containing tissue
1 ILLUMINA (NextSeq 500) run: 19.1M spots, 1.5G bases, 664.1Mb downloads

Design: Sequencing libraries were prepared from 0.5 g total RNA using the TruSeq stranded mRNA reagents (Illumina). Indexed libraries were blended into a single pool and sequenced on 3 runs of a NextSeq 500 instrument (Illumina) using 75 bp single end reads. Image analysis and base calling were performed using Illumina's RTA software version 2.4.11, and converted to fastq format using bcl2fastq version 2.17.1.14.
Submitted by: University of Bergen
Study: Salmon louse labial gland enzymes
show Abstracthide Abstract
Salmon louse (Lepeophtheirus salmonis) is a skin and blood-feeding ectoparasite, infesting salmonids. While feeding, labial gland proteins from the salmon louse may be deposited on the Atlantic salmon (Salmo salar) skin. Previously characterized labial gland proteins are involved in anti-coagulation and may contribute to inhibiting Atlantic salmon from mounting a sufficient immune response against the ectoparasite. As labial gland proteins seem to be important in the host-parasite interaction, we have therefore identified and characterized ten enzymes localized to the labial gland. They are a large group of astacins named L. salmonis labial gland astacin 1-8 (LsLGA 1-8), one serine protease named L. salmonis labial gland serine protease 1 (LsLGSP1), and one apyrase named L. salmonis labial gland apyrase 1 (LsLGAp1). Protein domain predictions showed that LsLGA proteins all have N-terminal ShK-domains, which may bind to potassium channels targeting the astacins to its substrate. LsLGA1 and 4 are in addition expressed in another gland type, whose secrete also meets the host-parasite interface. This suggests that LsLGA proteins may have an anti-microbial function and may prevent secondary infections in the wounds. LsLGAp1 is predicted to hydrolyze ATP or AMP and is thereby suggested to have an immune dampening function. In a knock down study targeting LsLGSP1, a significant increase in IL-8 and MMP13 at the skin infestation site was seen under LsLGSP1 knock down salmon louse compared to the control, suggesting that LsLGSP1 may have an anti-inflammatory effect. Moreover, most of the identified labial gland proteins are expressed in mature copepodids prior to host settlement, are not regulated by starvation, and are expressed at similar or higher levels in lice infesting the salmon louse resistant pink salmon (Oncorhynchus gorbuscha). This study thereby emphasizes the importance of labial gland proteins for host settlement and their immune dampening function. This work can further contribute to anti-salmon louse treatment such as vaccine development, functional feed, or gene-edited salmon louse resistant Atlantic salmon.
Sample: Lepeophtheirus salmonis tissue from adult female containing labial gland
SAMN37110433 • SRS18705610 • All experiments • All runs
Library:
Name: 58-KJ-S40
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: SINGLE
Runs: 1 run, 19.1M spots, 1.5G bases, 664.1Mb
Run# of Spots# of BasesSizePublished
SRR2574782019,111,9041.5G664.1Mb2024-01-07

ID:
28912231

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