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SRX1150432: Genomic Sequencing of CG2 Clonal Zebrafish
1 ILLUMINA (Illumina HiSeq 2500) run: 380.1M spots, 76G bases, 32.6Gb downloads

Submitted by: University of Chicago
Study: Danio rerio strain:CG2 genome sequencing and assembly
show Abstracthide Abstract
Genomic DNA purified from a whole CG2 clonal zebrafish was sequenced using an Illumina HiSeq2500 (yielding 38 Gb of 2 x 100 paired-end reads with approximately 25 x sequence coverage). Illumina adapters were removed using SeqPrep v1.1. Reads were filtered for quality with Trimmomatic v0.3, and read quality was assessed using FastQC. The de novo assembly was generated using SOAPdenovo2.
Sample: Danio rerio CG2 clonal zebrafish
SAMN03964926 • SRS1035219 • All experiments • All runs
Organism: Danio rerio
Library:
Name: JD19
Instrument: Illumina HiSeq 2500
Strategy: WGA
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward101  reverse

Pipeline: show...hide...
ProgramVersion
bcl2fastq1.8.3
Runs: 1 run, 380.1M spots, 76G bases, 32.6Gb
Run# of Spots# of BasesSizePublished
SRR2165746380,097,71876G32.6Gb2016-08-12

ID:
1674503

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