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SRX23576427: Amplicon sequencing for detection of pathogens and antibiotic resistant gene: Culture
1 OXFORD_NANOPORE (MinION) run: 468,493 spots, 316M bases, 284Mb downloads

Design: Amplicon sequencing using 18S rRNA targets was performed. Library was prepared with SQL-LSK109 kit as per manufacturers instructions and sequenced on R9.4.1 flow cells.
Submitted by: HaystackAnalytics Pvt. Ltd.
Study: An integrated method for targeted Oxford Nanopore sequencing and automated bioinformatics for the simultaneous detection of bacteria, fungi and ARGs
PRJNA1074527 • SRP488950 • All experiments • All runs
show Abstracthide Abstract
The study describes a workflow to encourage the clinical utility and potential of next generation sequencing for the simultaneous detection of bacteria, fungi and antimicrobial resistance genes
Sample:
SAMN39862163 • SRS20421675 • All experiments • All runs
Organism: Candida tropicalis
Library:
Name: HAPL_LIB_ID23_002
Instrument: MinION
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Runs: 1 run, 468,493 spots, 316M bases, 284Mb
Run# of Spots# of BasesSizePublished
SRR27918006468,493316M284Mb2024-07-01

ID:
31845152

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