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ERX12033916: qiita_ptid_16396:15406.24
1 ILLUMINA (Illumina MiSeq) run: 32,808 spots, 8.2M bases, 5.1Mb downloads

Design: two-species cross-fostering
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: An experimental approach towards untangling the role of nature versus nurture in shaping the microbiome of social insects
show Abstracthide Abstract
The gut microbiota is intimately related to host wellbeing, in terms of physiology, immune function, and even social interactions. The strength of this relationship is dynamic, but the extent to which the microbiome is shaped by the identity of the host (nature) or its environment (nurture) remains largely unknown. Here we aimed to identify factors shaping the microbiomes of nursing workers and larvae of two Vespidae species, using a cross-species experimental design to control for effects of environment, host identity and their interactions. We found that the microbiome composition of adults depended principally on the environment. Conversely, larval microbiome composition differed more between host species, regardless of treatment. We also found distinct microbiota profiles between the two species, across life stages and independently. These findings further elucidate the complexity of the host-microbiome relationship shaped by the environment while retaining symbionts that benefit the host. These results suggest that holobiont evolution may have promoted the rise of social behavior in animals.
Sample: 15406.24
SAMEA115293197 • ERS18283402 • All experiments • All runs
Organism: wasp metagenome
Library:
Name: 15406.24
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina MiSeq 515fbc, 806r amplification of 16SrRNA V4
Experiment attributes: (show all 11 attributes...) (hide...)
barcode: GATCCCACGTAC
center_name: Genomic Center at the Bar-Ilan University Azrieli (show full text...)(hide...)
Genomic Center at the Bar-Ilan University Azrieli Faculty of Medicine in Tzfat, Israel
extraction_protocol: PureLink Microbiome DNA Purification Kit
primer: TATGGTAATTGTGTGCCAGCMGCCGCGGTAA
reverseprimer: ATTAGAWACCCBDGTAGTCCGGCTGACTGACT
run_prefix: wasp
sample_plate: 4
sequencing_method: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
well_id: B10
Runs: 1 run, 32,808 spots, 8.2M bases, 5.1Mb
Run# of Spots# of BasesSizePublished
ERR1265962432,8088.2M5.1Mb2024-02-15

ID:
31903163

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