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DRX498876: Illumina HiSeq 2500 sequencing of SAMD00659122
1 ILLUMINA (Illumina HiSeq 2500) run: 35.6M spots, 2.3G bases, 1.5Gb downloads

Submitted by: UT_IQB
Study: piRNA profile of Zuc knockdown in BmN4 cells
show Abstracthide Abstract
PIWI-interacting RNAs (piRNAs) are small RNAs that play a critical role in repressing transposons in the germline by guiding PIWI proteins to complementary target sequences. It is well known that the 5' ends of piRNAs are typically defined through cleavage by PIWI proteins or by the endonuclease Zucchini, and that piRNAs are amplified via reciprocal cleavage of sense and antisense transcripts by PIWI proteins. Here, we show that low levels of sense-stranded piRNAs are produced from the whole transcriptome in silkworms. To examine the requirement of Zuc in the production of gene-derived sense piRNAs, we investigated the change in their expression upon the knockdown (KD) of Zuc.
Sample: small RNA library from Rluc knock down BmN4 cells
SAMD00659122 • DRS371331 • All experiments • All runs
Organism: Bombyx mori
Library:
Name: dsLuc_BmN4
Instrument: Illumina HiSeq 2500
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol:
Runs: 1 run, 35.6M spots, 2.3G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
DRR51499035,570,8862.3G1.5Gb2024-03-30

ID:
32414517

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