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SRX24162919: Illumina reads of YNB-passaged TA8-3 isolate
1 ILLUMINA (Illumina NovaSeq 6000) run: 12.6M spots, 3.8G bases, 1.1Gb downloads

Design: Genomic DNA was extracted and prepared for sequencing using the NEBNext UltraII DNA Library Prep Kit. 12-14 strains per run were barcoded, normalized, and pooled, and 100 million 150x150 bp paired-end reads were collected on a NovaSeq S4 Flow Cell with the v1.5 Reagent Kit.
Submitted by: University of Utah
Study: Genetics of thermotolerance in Cryptococcus neoformans
show Abstracthide Abstract
Fungal pathogens are remarkably adept at adapting to constantly changing environments including changing temperatures and increased thermotolerance is often thought of as a primary virulence factor of these microbes. To understand how fungi are able to evolve thermotolerance, we serially passaged the Cryptococcus neoformans strain Ftc239-1 at gradually increasing temperatures. Fungal cells were passaged for 40 days at temperatures ranging from 30-35C and were subsequently assessed for a change in their ability to withstand thermal stress and grow at high temperatures. Populations and individual clonal isolates were identified with increased thermotolerance and genetic changes in these populations were identified by whole genome sequencing. High quality genomic DNA was extracted from lyophilized cell pellets using CTAB extraction protocols.
Sample: Single colony #3 from the TA8 population that was passaged in YNB
SAMN40758119 • SRS20943256 • All experiments • All runs
Library:
Name: TA8-3
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 12.6M spots, 3.8G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR2856366212,643,2693.8G1.1Gb2024-04-05

ID:
32473825

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