U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX24586516: RNA-Seq of Oryza sativa Indica Group IR28 5dpi: U.virens conidia inoculation 1 dpi replicate 1
1 ILLUMINA (Illumina HiSeq 2000) run: 23M spots, 6.9G bases, 2.1Gb downloads

Design: IR28 U.virens conidia inoculation 5 dpi replicate 1
Submitted by: Hubei Academy of Agricultural Sciences
Study: Transcriptome analysis of cultivar IR28 and WX98 during Ustilaginoidea virens infection
PRJNA1112547 • SRP508247 • All experiments • All runs
show Abstracthide Abstract
Rice false smut is caused by the ascomycete fungal pathogen Ustilaginoidea virens (Cooke) Takahashi. It hijacks host nutrients for mycelial growth and forms false smut balls in rice flowers leading to grain contamination of poisonous mycotoxins.Due to the infection rate and number of smut balls in resistant cultivar IR28 were significantly lower than those of susceptible cultivar WX98 during conidia injection inoculation. Thus, a compared transcriptome analysis between IR28 and WX98 was deployed during U. virens infection.
Sample: IR28_5dpi_r1
SAMN41430539 • SRS21326186 • All experiments • All runs
Organism: Oryza sativa Indica Group
Library:
Name: IR28_5dpi_r1
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: PAIRED
Runs: 1 run, 23M spots, 6.9G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR2906197923,016,1006.9G2.1Gb2024-05-17

ID:
32904773

Supplemental Content

Related information

Recent activity