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SRX1618768: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium var. O:5- by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 779,324 spots, 381.1M bases, 249Mb downloads

External Id: EXT00169546
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Washington State Department of Health Public Health Laboratory
PRJNA183851 • SRP028334 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN04217335 • SRS1327914 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Typhimurium var. 5-
Library:
Name: Salmonella enterica subsp. enterica serovar Typhimurium var. O:5- Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium var. O:5-.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 779,324 spots, 381.1M bases, 249Mb
Run# of Spots# of BasesSizePublished
SRR3210505779,324381.1M249Mb2016-03-07

ID:
2311257

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