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SRX1544045: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium var. O:5- by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 614.6M bases, 395.7Mb downloads

External Id: EXT00159766
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Washington State Department of Health Public Health Laboratory
PRJNA183851 • SRP028334 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN04217337 • SRS1260542 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Typhimurium var. 5-
Library:
Name: Salmonella enterica subsp. enterica serovar Typhimurium var. O:5- Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium var. O:5-.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.4M spots, 614.6M bases, 395.7Mb
Run# of Spots# of BasesSizePublished
SRR31161581,435,576614.6M395.7Mb2016-01-25

ID:
2187288

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