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SRX1531633: GSM2039978: Capsella rubellla Cr B x Cr A R1; Capsella rubella; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 88.7M spots, 17.7G bases, 11Gb downloads

Submitted by: NCBI (GEO)
Study: Imprinted genes in Capsella rubella
show Abstracthide Abstract
Genome-wide identification of imprinted genes in C. rubella. Overall design: Two replicates of Capsella rubella reciprocal hybrid seeds
Sample: Capsella rubellla Cr B x Cr A R1
SAMN04414868 • SRS1248945 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: For DNA-seq, 300 mg young fresh leaves were used as DNA source. For RNA-seq, dissected endosperm of 300-500 seeds per replicate was used. Seeds were harvested at 6 DAP and stored at -20oC in RNAlater® (Sigma-Aldrich, St Louis, USA). RNA extraction was done using RNAqueous® Kit with Plant RNA Isolation Aid (Life Technologies, Carlsbad, USA). The RNA-sequencing libraries were prepared using TruSeq® RNA Sample Preparation Kit v2 (Illumina, San Diego, USA) according to the manufacturer's instructions. DNA-seq and RNA-seq
Experiment attributes:
GEO Accession: GSM2039978
Links:
Runs: 1 run, 88.7M spots, 17.7G bases, 11Gb
Run# of Spots# of BasesSizePublished
SRR310266688,743,40117.7G11Gb2017-08-24

ID:
2168523

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