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SRX2042157: Whole genome shotgun sequencing of Campylobacter jejuni by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 363,863 spots, 172M bases, 88.7Mb downloads

External Id: EXT00211043
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Virginia - Division of Consolidated Laboratory Services
show Abstracthide Abstract
Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.
Sample:
SAMN05462183 • SRS1634962 • All experiments • All runs
Library:
Name: Campylobacter jejuni Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Campylobacter jejuni.
Spot descriptor:
forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 363,863 spots, 172M bases, 88.7Mb
Run# of Spots# of BasesSizePublished
SRR4052594363,863172M88.7Mb2016-08-24

ID:
2951399

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