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SRX2618975: Whole genome shotgun sequencing of Escherichia coli serovar O157:H7 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 588.8M bases, 316.8Mb downloads

External Id: EXT00247219
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: California Department of Health - FDLB Micro
PRJNA277984 • SRP071258 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.
Sample:
SAMN06464140 • SRS2029099 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli serovar O157:H7 Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O157:H7.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.4M spots, 588.8M bases, 316.8Mb
Run# of Spots# of BasesSizePublished
SRR53195601,371,239588.8M316.8Mb2017-03-07

ID:
3790828

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