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SRX2704854: GSM2563464: A3: High Fat-Early Exercise (HF-EEX); Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 17.5M spots, 5.3G bases, 1.8Gb downloads

Submitted by: NCBI (GEO)
Study: A memory of early life physical activity is retained in bone marrow of adult rats but does not prevent reversal to obese phenotype
show Abstracthide Abstract
Studies have reported opposing effects of high-fat diet and mechanical stimulation on lineage commitment of the bone marrow stem cells. Yet, how the bone marrow modulates its gene expression in response to the combined effects of mechanical loading and a high-fat diet has not yet been addressed. We investigated whether early-life voluntary physical activity can modulate the effects of a high-fat diet on body composition, bone phenotype and bone marrow gene expression in male Sprague Dawley rats. We show that early-life high-fat diet positively affected body weight, total fat percentage and bone mass indices. In the bone marrow, early-life high-fat diet resulted in adipocyte hypertrophy and a pro-inflammatory and pro-adipogenic gene expression profile. Crucially, the bone marrow of the rats that undertook wheel exercise while on a high-fat diet retained a memory of the early-life exercise. This memory lasted at least 60 days after the cessation of the voluntary exercise and was manifest by: 1) the bone marrow adipocyte size of the exercised rats not exhibiting hypertrophy; and 2) genes associated with mature adipocyte function being down-regulated. Our results are consistent with the marrow adipose tissue having a unique and long-lasting response to high-fat feeding in the presence or absence of exercise. Overall design: Eighty male SD rats were randomised at weaning into : chow-fed group (C-SED) or a high-fat fed group. The high-fat fed group was further divided into three sub-groups: the high-fat sedentary (HF-SED) group, the high-fat late-exercise (HF-LEX) group, and the high-fat early-exercise (HF-EEX) group. At day 120-123, the animals were culled and total RNA was extracted from the bone marrow of the femur. The RNA was sequenced using Illumina Hiseq4000 technology. Differential gene expression analysis was carried out using Tuxedo suite of bioinformatic tools.
Sample: A3: High Fat-Early Exercise (HF-EEX)
SAMN06680414 • SRS2098556 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: The left femur was partially sawn at the junction of (1) the distal and the middle thirds and (2) the middle and proximal thirds.The femur was snapped and the resulting mid-diaphysis was centrifuged (10,000 rpm, 4oC, 30s) to obtain the bone marrow. Total RNA was extracted using TRIzol® and cleaned up using RNeasy minikit. A minimum of 1.5 ug of total RNA was sent to Novogene for RNA-seq After QC, mRNA is enriched from total RNA by Oligo (dT) beads. The mRNA is fragmented randomly by adding fragmentation buffer, then the cDNA is synthesized by using mRNA template and random hexamers primer, after which a custom second-strand synthesis buffer (Illumina) , dNTPs, RNase H and DNA polymerase I are added to initiate the second-strand synthesis. Second, after a series of terminal repair, A ligation and sequencing adaptor ligation, the double-stranded cDNA library is completed through size selection and PCR
Experiment attributes:
GEO Accession: GSM2563464
Links:
Runs: 1 run, 17.5M spots, 5.3G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR541286517,545,7165.3G1.8Gb2017-08-31

ID:
3902033

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