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SRX2787788: Whole genome shotgun sequencing of FSIS1700569 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1M spots, 304.5M bases, 185.3Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)
Study: FSIS NARMS Salmonella
PRJNA292666 • SRP062916 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.
Sample:
SAMN06899411 • SRS2169430 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Uganda
Library:
Name: FSIS1700569 Nextera XT shotgun library
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for FSIS1700569.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1M spots, 304.5M bases, 185.3Mb
Run# of Spots# of BasesSizePublished
SRR55144041,039,151304.5M185.3Mb2017-05-05

ID:
4020586

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