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SRX2883443: Whole genome shotgun sequencing of Campylobacter coli by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 635,150 spots, 297.2M bases, 173.1Mb downloads

External Id: EXT00262481
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Thakur Molecular Epidemiology Laboratory, NC State University
PRJNA293228 • SRP108617 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.
Sample:
SAMN06921920 • SRS2251851 • All experiments • All runs
Organism: Campylobacter coli
Library:
Name: Campylobacter coli Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Campylobacter coli.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 635,150 spots, 297.2M bases, 173.1Mb
Run# of Spots# of BasesSizePublished
SRR5645348635,150297.2M173.1Mb2017-06-05

ID:
4131219

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