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SRX2932113: RNA-seq of Pseudoalteromonas agarivorans: marine environment
1 ILLUMINA (Illumina HiSeq 2000) run: 5.5M spots, 1.1G bases, 404.1Mb downloads

Design: 1. total RNA 2. RNA fragment 3. removal of rRNA, fragmentation, cDNA synthesis and PCR amplification
Submitted by: Shandong University
Study: Pseudoalteromonas agarivorans Transcriptome or Gene expression
show Abstracthide Abstract
Alginate is the main component of the cell wall of brown algae. It has been reported that Pseudoalteromonas can produce alginate lyase, implying that the strains have the ability to degrade alginate. Whole genome sequencing of multiple species in Pseudoalteromonas have been carried out. Based on this, we performed a research on the utilization of alginate of this genus by using comparative genome analysis and experimental verification, aiming to reveal its degradation and metabolic pathways, and to lay a foundation for clarifying the degradation mechanism of particulate organic matters by marine bacteria.
Sample: Microbe sample from Pseudoalteromonas agarivorans
SAMN07211295 • SRS2294821 • All experiments • All runs
Library:
Name: Paga_Glc_1
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 5.5M spots, 1.1G bases, 404.1Mb
Run# of Spots# of BasesSizePublished
SRR57115105,547,1711.1G404.1Mb2018-06-28

ID:
4187340

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