PE WGS Illumina sequencing of Entamoeba moshkovskii strain Laredo, wi... - SRA

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SRX6818694: PE WGS Illumina sequencing of Entamoeba moshkovskii strain Laredo, with additional singlet reads, originally mapped to Entamoeba moshkovskii Laredo 454 Genome Assembly
1 ILLUMINA (Illumina MiSeq) run: 5.5M spots, 1.6G bases, 862.1Mb downloads

Design: DNA from axenic culture grown in LYI-S-2 media, extracted using adapted CTAB phenol-chloroform extraction method. 100bp library prepared and sequenced using TruSeq DNA sample prep low throughput protocol.

Submitted by: University of Liverpool

Study: Entamoeba moshkovskii Laredo genome sequencing and assembly

PRJNA407662 • SRP221037 • All experiments • All runs

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Recent studies have suggested that Entamoeba moshkovskii is capable of causing symptomatic amoebiasis in human hosts. We sequenced and performed a de novo assembly of Entamoeba moshkovskii Laredo, and mapped to it reads from 3 more strains - FIC, 15114, and 'Snake' - in order to investigate the virulence properties of strains of this species.

Sample: Entamoeba moshkovskii strain Laredo

SAMN07660612 • SRS5362238 • All experiments • All runs

Organism: Entamoeba moshkovskii

Library:

Name: Em_Laredo

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 5.5M spots, 1.6G bases, 862.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR10085688	5,536,843	1.6G	862.1Mb	2019-09-09

ID:: 8979651

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