Shawnee_CSHQ-8-1_PstI - SRA

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SRX3269357: Shawnee_CSHQ-8-1_PstI
1 ILLUMINA (Illumina HiSeq 2500) run: 2.6M spots, 337.6M bases, 141.2Mb downloads

Design: Genomic DNA from 100 Carya illinoinensis, 5 Crop Wild Relative, and 3 interspecific cross samples was digested using the restriction enzyme PstI. These samples were barcoded and pooled in groups of 67 samples or less and sequenced on an Illumina-HiSeq 2500v4 using a 125bp single-end sequencing strategy. Sequence data was un-multiplexed, and the barcodes removed. The resulting trimmed reads for each sample are provided as fastq files.

Submitted by: Texas A&M University

Study: This project characterized 100 Carya illinoinensis, 5 Crop Wild Relative, and 3 interspecific cross samples from verified collections of the National Collection of Genetic Resources for Pecans and Hickories. Raw sequence reads

PRJNA413769 • SRP119736 • All experiments • All runs

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This project performed genotyping by sequencing (GBS) on a panel of Carya illinoinensis samples representing the major cultivars of pecan and a small number of crop wild relatives. The enzyme PstI was used to digest genomic DNA of 100 Carya illinoinensis, 5 Crop Wild Relative, and 3 interspecific cross samples.

Sample: Shawnee_CSHQ-8-1_PstI

SAMN07766600 • SRS2581088 • All experiments • All runs

Organism: Carya illinoinensis

Library:

Name: Shawnee_Klein2016_PstI

Instrument: Illumina HiSeq 2500

Strategy: WGS

Source: GENOMIC

Selection: Restriction Digest

Layout: SINGLE

Runs: 1 run, 2.6M spots, 337.6M bases, 141.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR6157751	2,596,908	337.6M	141.2Mb	2019-01-29

ID:: 4590461

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