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SRX3503549: PacBio seq of C.horridus: genomic DNA
1 PACBIO_SMRT (PacBio RS II) run: 5.5M spots, 57.8G bases, 40Gb downloads

Design: Column purified (Qiagen) BAC clone DNA (10000 micrograms) was sheared (10 - 20 kilobase pair fragments) before processing through the standard Pacific Biosciences library protocol.
Submitted by: University of Wisconsin - Madison, HHMI
Study: Identification of the genetic basis of venom variation in three rattlesnake species
show Abstracthide Abstract
Rattlesnakes often express venom with a discreet effect, such as, neurotoxicity or hemotoxicity. However, within some species both neurotoxic or hemotoxic venom types are found within individuals. In this study, we sequenced the genomic regions of key venom in three species (Crotalus scutulatus, Mojave rattlesnake; C. helleri, Southern Pacific rattlesnake; C. horridus, Timber rattlesnake) known to express multiple venom types. Specifically, we sequenced the phospholipase A2 (PLA2) and metalloproteinase (MP) venom gene complexes because the rattlesnake neurotoxin is the product of the venom PLA2 gene complex and hemorrhagic rattlesnake venom is associated with high levels of MPs. The objective of this study was to identify the genetic basis of intra-species venom variation.
Sample:
SAMN08216883 • SRS2781183 • All experiments • All runs
Library:
Name: ChorrA_genomic
Instrument: PacBio RS II
Strategy: WGA
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Runs: 1 run, 5.5M spots, 57.8G bases, 40Gb
Run# of Spots# of BasesSizePublished
SRR64104315,456,09857.8G40Gb2017-12-21

ID:
4869231

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