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SRX3712989: Whole genome shotgun sequencing of FSIS11807546 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.8M spots, 542.5M bases, 285.3Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)
Study: FSIS NARMS Salmonella
PRJNA292666 • SRP062916 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.
Sample:
SAMN08554080 • SRS2971486 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Barranquilla
Library:
Name: FSIS11807546 Nextera XT shotgun library
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for FSIS11807546.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.8M spots, 542.5M bases, 285.3Mb
Run# of Spots# of BasesSizePublished
SRR67400571,810,887542.5M285.3Mb2018-02-15

ID:
5121177

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