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SRX3892855: Deep-sequencing of herpes viruses genomes
1 ILLUMINA (NextSeq 500) run: 1.2M spots, 374.8M bases, 156.4Mb downloads

Design: Deep sequencing of viral RNA after a specific RT-PCR usign NGS
Submitted by: Hospices Civils de Lyon
Study: Next generation sequencing for the detection of antiviral drug resistant herpes simplex virus type 1 (HSV-1) subpopulations in immunocompromised patients
PRJNA448896 • SRP137708 • All experiments • All runs
show Abstracthide Abstract
Using the NextSeq 500 Illumina sequencer, this study aimed to show the “hidden part” of the viral population to understand the kinetic of the viral switch between sensitive and resistant viral subpopulations.
Sample:
SAMN08872167 • SRS3130667 • All experiments • All runs
Organism: Herpesviridae
Library:
Name: S60
Instrument: NextSeq 500
Strategy: AMPLICON
Source: VIRAL RNA
Selection: RT-PCR
Layout: PAIRED
Runs: 1 run, 1.2M spots, 374.8M bases, 156.4Mb
Run# of Spots# of BasesSizePublished
SRR69464581,249,363374.8M156.4Mb2019-01-01

ID:
5346519

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