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SRX5671304: GSM3720281: diploid grass (TA) embryo sample taken at leaf early stage TA4; Aegilops tauschii; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 55.5M spots, 11.2G bases, 4.6Gb downloads

Submitted by: NCBI (GEO)
Study: The Evolution of Gene Expression in Polyploid Wheats and Their Diploid Ancestors during Embryogenesis
show Abstracthide Abstract
we present an atlas of global gene expression as well as the evolutionary divergence covering embryo, endosperm and seed coat development in wheats and their diploid ancestors, providing insights into the evolution of gene expression in embryogenesis and grain development of wheat species. Overall design: We investigate the dynamics and evolution of gene expression throughout seven stages of embryo development (including the two cell, pre-embryo, transition, leaf early, leaf middle, leaf late and mature embryo), two stages of endosperm (transition stage endosperm and leaf late stage endosperm), and one pericarp stage (leaf early stage pericarp) across five wheat and ancestral grass species (AC -hexaploid, SF-tetraploid, DV-A genome diploid, SP-B genome diploid and TA-D genome diploid), two replicates for each stage.
Sample: diploid grass (TA) embryo sample taken at leaf early stage TA4
SAMN11400333 • SRS4614136 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from embryo, endosperm and seed coat of wheat speciesat different development stages following the protocol of RNAqueous-Micro kit (Ambion, Catalog# 1927), two replicates for each development stage. The quantity of RNA isolated from early stage was insufficient for preparation of libraries for the RNA-seq experiments. Therefore the mRNA of all stages was amplified and the aRNA were used for RNA-seq analysis. The mRNA amplification was conducted according to the protocol provided in the MessageAmp aRNA kit (Ambion, Catalog# 1750). For RNA-seq profile analysis, we prepared Illumina mRNA-seq libraries using the TruSeq RNA kit (version 1, rev A), the libraries were prepared by using aRNA according to manufacturer's instruction. For HiSeq 2500 sequencing, 4 libraries were pooled per sequencing lane Libraries were prepared according to Illumina's instructions, using the TruSeq RNA v2 LT kit and sequenced on the Genome Analyzer following the manufacturer's protocols (https://www.illumina.com/documents/products/datasheets/datasheet_hiseq2500.pdf).
Experiment attributes:
GEO Accession: GSM3720281
Links:
Runs: 1 run, 55.5M spots, 11.2G bases, 4.6Gb
Run# of Spots# of BasesSizePublished
SRR888557755,456,66011.2G4.6Gb2019-10-21

ID:
7644608

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