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SRX9260463: GSM4822872: p20097-s069_RAt11_4dpi; Macaca mulatta; RNA-Seq
2 ILLUMINA (Illumina NovaSeq 6000) runs: 24.8M spots, 2.5G bases, 727.8Mb downloads

Submitted by: NCBI (GEO)
Study: Baricitinib treatment resolves lower airway inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques [RNA-Seq]
show Abstracthide Abstract
SARS-CoV-2 induced hypercytokinemia and inflammation are critically associated with COVID-19 disease severity. Baricitinib, a clinically approved JAK1/2 inhibitor, is currently being investigated in COVID-19 clinical trials. Here, we investigated the immunologic and virologic efficacy of baricitinib in a rhesus macaque model of SARS-CoV-2 infection. Viral shedding measured from nasal and throat swabs, bronchoalveolar lavages and tissues was not reduced with baricitinib. Type-I IFN antiviral responses and SARS-CoV-2-specific T-cell responses remained similar between the two groups. Importantly, animals treated with baricitinib showed reduced inflammation, decreased lung infiltration of neutrophils, reduced NETosis activity, and more limited lung pathology. Moreover, baricitinib treated animals had a rapid and remarkably potent suppression of lung macrophages production of cytokines and chemokines responsible for inflammation and neutrophil recruitment. These data support a beneficial role for, and elucidate the immunological mechanisms underlying, the use of baricitinib as a frontline treatment for severe inflammation induced by SARS-CoV-2 infection. Overall design: Eight rhesus macaques (Macaca mulatta) were infected with SARS-CoV-2. Four RMs were administered 4 mg Baricitinib starting at day 2 post-infection (DPI) for 8-9 consecutive days. RNA-Seq profiling of cells isolated from BAL (bronchoalveolar lavages) prior to SARS-CoV-2 inoculation (-5 DPI; Baseline); 2 days after virus inoculation, prior to baricitinib treatment (2 DPI); and 4 days after infection, and 48 hours after beginning baricitinib (4 DPI).
Sample: p20097-s069_RAt11_4dpi
SAMN16392945 • SRS7490538 • All experiments • All runs
Organism: Macaca mulatta
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: 50,000 cells were lysed directly into 700 ul of QIAzol reagent. RNA was isolated using RNeasy Mini or Micro kits (Qiagen) with on-column DNase digestion. RNA quality was assessed using an Agilent Bioanalyzer total RNA was used as input for cDNA synthesis using the Clontech SMART-Seq v4 Ultra Low Input RNA kit (Takara Bio) according to the manufacturer's instructions. Amplified cDNA was fragmented and appended with dual-indexed bar codes using the NexteraXT DNA Library Preparation kit (Illumina). Libraries were validated by capillary electrophoresis on an Agilent 4200 TapeStation, pooled at equimolar concentrations, and sequenced on an Illumina NovaSeq6000 at 100SR, yielding 20-25 million reads per sample.
Experiment attributes:
GEO Accession: GSM4822872
Links:
Runs: 2 runs, 24.8M spots, 2.5G bases, 727.8Mb
Run# of Spots# of BasesSizePublished
SRR1279132312,554,2671.3G366.2Mb2020-11-10
SRR1279132412,281,2201.2G361.6Mb2020-11-10

ID:
12080026

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