Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

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SRX360743: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-230614' containing sample 'ORNL_V42_G09'
7 ILLUMINA (Illumina HiSeq 2000) runs: 3.1M spots, 635.9M bases, 396.5Mb downloads

UUID: 1ae7609a-c6eb-4ce5-9581-7bfe0190a5ca

Design: Illumina sequencing of Pelomonas sp. ORNL_6EZ5-Gt_10_Pl2-173 via random selection

Submitted by: Broad Institute (BI)

Study: HMP reference genome

PRJNA197072 • SRP030577 • All experiments • All runs

Sample: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl2-173

SAMN00696748 • SRS255721 • All experiments • All runs

Organism: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl2-173

Library:

Name: Pond-230614

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: WGS

gssr_id: 302715.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:41WNO

material_type: DNA:DNA Somatic

product_order: PDO-526

product_part_number: P-WG-0004

project: G32720

research_project: RP-129

root_sample_id: SM-3QFJC

sample_id: SM-41WNO

work_request: 35919

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-08 19:07:00.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 7 runs, 3.1M spots, 635.9M bases, 396.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR1003980	452,618	91.4M	57Mb	2013-09-27
SRR1003981	452,826	91.5M	57Mb	2013-09-27
SRR1003982	445,196	89.9M	56.1Mb	2013-09-27
SRR1003983	452,270	91.4M	57Mb	2013-09-27
SRR1003984	448,153	90.5M	56.4Mb	2013-09-27
SRR1003985	450,500	91M	56.8Mb	2013-09-27
SRR1003986	446,403	90.2M	56.3Mb	2013-09-27

ID:: 509948

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