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ERX2728433: HiSeq X Ten paired end sequencing; Mainland tiger snake whole genome sequencing - Illumina sequencing
1 ILLUMINA (HiSeq X Ten) run: 404.6M spots, 120.1G bases, 51.4Gb downloads

Submitted by: UNIVERSITY OF NEW SOUTH WALES
Study: De novo whole genome sequencing of the mainland tiger snake, Notechis scutatus
show Abstracthide Abstract
The mainland tiger snake, Notechis scutatus, is a venomous snake species found in Australia. We have performed whole genome sequencing and de novo assembly of the mainland tiger snake, using 10x Chromium linked reads. Supernova v2 assembly of the data generated a 1.67 Gb draft genome with a maximum scaffold size of 50.9 Mb, primary scaffold N50 of 6.00 Mb (4.84% gaps) and a primary scaffold BUSCO (v2.0.1 short) completeness estimate of 87.3%. Pseudodiploid processing of the assembly generated non-redundant alternative scaffolds for 1.26 Gb (75.6%) of the assembly, with an N50 of 8.50 Mb (5.20% gaps).
Sample: Female mainland tiger snake
SAMEA4800209 • ERS2620127 • All experiments • All runs
Library:
Name: 170814_FR07936202
Instrument: HiSeq X Ten
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: High-molecular weight DNA was extracted from the blood of an adult female mainland tiger snake (Notechis scutatus) and used to generate a 10x Genomics Chromium paired end sequencing library. This library was sequenced on an Illumna HiSeq X Ten.
Runs: 1 run, 404.6M spots, 120.1G bases, 51.4Gb
Run# of Spots# of BasesSizePublished
ERR2714264404,605,448120.1G51.4Gb2018-07-29

ID:
6067518

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