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SRX8085416: Metagenomics of Severe acute respiratory syndrome coronavirus 2
1 ILLUMINA (Illumina iSeq 100) run: 3.9M spots, 1.1G bases, 342.6Mb downloads

Submitted by: NIAID LMVR
Study: Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia
PRJNA623895 • SRP255769 • All experiments • All runs
show Abstracthide Abstract
Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia's first case of COVID-2019. Contact: Jessica E. Manning. This submission was powered by METAGENOTE (https://metagenote.niaid.nih.gov).
Sample: CAMBOSARS-COV-2
SAMN14560168 • SRS6452975 • All experiments • All runs
Organism: Severe acute respiratory syndrome coronavirus 2
Library:
Name: 0012-2-1_L001 -- no subsampling_41189_original_R1.fastq.gz.YGGDSXRHBFF/SARS-CoV-2
Instrument: Illumina iSeq 100
Strategy: RNA-Seq
Source: VIRAL RNA
Selection: PCR
Layout: PAIRED
Construction protocol: missing
Runs: 1 run, 3.9M spots, 1.1G bases, 342.6Mb
Run# of Spots# of BasesSizePublished
SRR115137763,861,0651.1G342.6Mb2020-04-10

ID:
10528053

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