Shotgun DNA sequencing of Enterococcus faecium - SRA

SRX10361903: Shotgun DNA sequencing of Enterococcus faecium
1 ILLUMINA (Illumina MiSeq) run: 506,805 spots, 120.4M bases, 79.8Mb downloads

Design: DNA extracted using DNeasy Blood and Tissue Kit (Qiagen) from a single bacterial colony, libraries prepared using Nextera XT DNA sample preparation kit (Illumina)

Submitted by: Copenhagen University Hospital Hvidovre

Study: Substantial decrease in Vancomycin-resistant Enterococcus faecium outbreak duration and number of patients during the Danish COVID-19 lockdown - a prospective observational study

PRJNA686881 • SRP310987 • All experiments • All runs

show Abstracthide Abstract

Vancomycin-resistant enterococcus Faecium (VREfm) is a globally significant nosocomial pathogen with a rapidly increasing prevalence. The objectives of this study were to investigate the duration of VREfm outbreaks as well as studying the impacts infection control bundle strategies (ICBS) set up to curb COVID-19 spreading had on VREfm outbreaks

Sample:

SAMN18324260 • SRS8477503 • All experiments • All runs

Organism: Enterococcus faecium

Library:

Name: C00011037

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 506,805 spots, 120.4M bases, 79.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR13984177	506,805	120.4M	79.8Mb	2021-03-17

ID:: 13678477

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