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SRX10362156: Shotgun DNA sequencing of Enterococcus faecium
1 ILLUMINA (Illumina MiSeq) run: 642,606 spots, 184.5M bases, 97.6Mb downloads

Design: DNA extracted using DNeasy Blood and Tissue Kit (Qiagen) from a single bacterial colony, libraries prepared using Nextera XT DNA sample preparation kit (Illumina)
Submitted by: Copenhagen University Hospital Hvidovre
Study: Substantial decrease in Vancomycin-resistant Enterococcus faecium outbreak duration and number of patients during the Danish COVID-19 lockdown - a prospective observational study
PRJNA686881 • SRP310987 • All experiments • All runs
show Abstracthide Abstract
Vancomycin-resistant enterococcus Faecium (VREfm) is a globally significant nosocomial pathogen with a rapidly increasing prevalence. The objectives of this study were to investigate the duration of VREfm outbreaks as well as studying the impacts infection control bundle strategies (ICBS) set up to curb COVID-19 spreading had on VREfm outbreaks
Sample:
SAMN18324488 • SRS8477755 • All experiments • All runs
Organism: Enterococcus faecium
Library:
Name: C00012878
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 642,606 spots, 184.5M bases, 97.6Mb
Run# of Spots# of BasesSizePublished
SRR13984520642,606184.5M97.6Mb2021-03-17

ID:
13678730

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