Whole genome shotgun sequencing of FSIS11809481 by Illumina MiSeq - SRA

SRX4644221: Whole genome shotgun sequencing of FSIS11809481 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 381.6M bases, 191.9Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)

Study: FSIS NARMS Enterococcus

PRJNA292669 • SRP095353 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.

Sample:

SAMN09977196 • SRS3742291 • All experiments • All runs

Organism: Enterococcus faecium

Library:

Name: FSIS11809481 Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for FSIS11809481.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 1.3M spots, 381.6M bases, 191.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR7789313	1,273,071	381.6M	191.9Mb	2018-09-05

ID:: 6273204

Supplemental Content

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity