U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2628534: Porphyromonadaceae bacterium UBA7142
1 ILLUMINA (Illumina HiSeq 2000) run: 3.2M spots, 479.4M bases, 126.1Mb downloads

Design: BWA (BWA-MEM) mapping of Porphyromonadaceae bacterium UBA7142 using version 0.7.12-r1039 and assembled with CLC de novo assembler 4.4.1 with a genome coverage of 239.58
Submitted by: University of Queensland
Study: Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substantially flesh out the tree of life
show Abstracthide Abstract
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of high-quality bacterial and archaeal genomes directly from metagenomic data. In this study, we recovered 7,903 uncultivated genomes from >1,000 metagenomes available from the Sequence Read Archive. These genomes increase the phylogenetic diversity of current archaeal and bacterial genome trees by >30%.
Sample: Uncultivated Porphyromonadaceae bacterium UBA7142 genome recovered from SRX803756
SAMN06450448 • SRS2038381 • All experiments • All runs
Library:
Name: SRX803756.b7.bam
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 3.2M spots, 479.4M bases, 126.1Mb
Run# of Spots# of BasesSizePublished
SRR53295113,230,788479.4M126.1Mb2017-09-14

ID:
3806109

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...