Mapped reads for uncultivated Rhodopirellula bacterium UBA8648 genome... - SRA

SRX3575610: Mapped reads for uncultivated Rhodopirellula bacterium UBA8648 genome recovered from ERX288947
1 ILLUMINA (Illumina HiSeq 2000) run: 301,608 spots, 89.3M bases, 43.7Mb downloads

Design: Reads from ERX288947 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA8648 genome.

Submitted by: University of Queensland

Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.

PRJNA417962 • SRP130174 • All experiments • All runs

show Abstracthide Abstract

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.

Sample: Uncultivated Rhodopirellula bacterium UBA8648 genome recovered from ERX288947

SAMN08019325 • SRS2845494 • All experiments • All runs

Organism: Rhodopirellula sp.

Library:

Name: UBA8648_library

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 301,608 spots, 89.3M bases, 43.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR6485777	301,608	89.3M	43.7Mb	2018-02-23

ID:: 4961112

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity