Third Party Tools and Libraries
Third Party Packages
Currently NCBI Genome Workbench uses the following third party tools and libraries:
Package | Comment |
---|---|
BitMagic | C++ library of compressed bitsets and succinct containers |
Boost Test | Free peer-reviewed portable C++ source libraries |
GL2PS | OpenGL to PostScript printing library |
libbzip2 | File compression program |
libjpeg | Library for handling the JPEG (JFIF) image format |
libpng | Official PNG reference library |
libtiff | Library provides support for the Tag Image File Format (TIFF), a widely used format for storing image data |
libungif | A library and utilities for processing GIFs |
libuv | Multi-platform support library with a focus on asynchronous I/O |
libxml2 | XML C parser and toolkit |
libxslt | XSLT C library |
LZO | Portable lossless data compression library |
Nghttp2 | HTTP/2 C Library |
PCRE | Set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5 |
SQLite3 | C-language library that implements a small, fast, self-contained, high-reliability, full-featured, SQL database engine |
wxWidgets | C++ library that lets developers create applications for Windows, macOS, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages. |
zlib | A Massively Spiffy Yet Delicately Unobtrusive Compression Library |
Current Version is 3.8.2 (released December 12, 2022)
General
Help
Tutorials
- Basic Operation
- Using Active Objects Inspector
- Configure tracks and track display settings
- Working with Non-Public Data
- Viewing Multiple Alignments and Trees
- Broadcasting
- Genes and Variation
- Generating and Viewing Sequence Overlap Alignment
- Working with BAM Files
- Loading Tabular Data
- Working with VCF Files
- Sequence View Markers
- Opening Projects in Genome Workbench
- Publication quality graphics (PDF/SVG image export)
- Editing in Genome Workbench
- Create Protein Alignments using ProSplign
- GFF-CIGAR export for alignments
- Exporting Tree Nodes to CSV
- Generic Table View
- Running BLAST search against custom BLAST databases
- Using Phylogenetic Tree
- Coloring methods in Multiple Alignment View
- Displaying translation discrepancies
- Searching in Genome Workbench
- Graphical View Navigation and Manipulation
- Using the Text View to Review and Edit a Submission
- BAM haplotype filtering
- Displaying new non-NCBI molecules with annotations
- Creating phylogenetic tree from precalculated multiple alignment
- Creating phylogenetic tree starting from search
- Video Tutorials
General use Manuals
- Tree Viewer Formatting
- Tree Viewer Broadcasting
- Genome Workbench Macro
- Query Syntax in Genome Workbench and Tree Viewer
- Multiple Sequence Aligners
- Running Genome Workbench over X Window System
NCBI GenBank Submissions Manuals
- Table of Contents
- Introduction
- Genome Submission Wizard
- Save Submission File
- Reports
- Import
- Sequences
- Add Features
- Add Publication
- Comments
- Editing Tools