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Report for CCDS31462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31462.1 Public Homo sapiens 11 LDLRAD3 24 110 108 CCDS HistoryNCBI Gene:143458Re-query CCDS DB by CCDS ID:31462.1Re-query CCDS DB by GeneID:143458See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31462.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315571.6 ENSP00000318607.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315571.6Link to Ensembl Protein Viewer:ENSP00000318607.5Re-query CCDS DB by Nucleotide ID:ENST00000315571Re-query CCDS DB by Protein ID:ENSP00000318607
Original member Current member NCBI NM_174902.4 NP_777562.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174902.4Link to Protein Sequence:NP_777562.1Re-query CCDS DB by Nucleotide ID:NM_174902Re-query CCDS DB by Protein ID:NP_777562Link to BLAST:NP_777562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777562.1 345 Q86YD5-1 345 100% 0 0

Chromosomal Locations for CCDS 31462.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 35944099 35944144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36036103 36036249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36081653 36081778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36098327 36098461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36227085 36227430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 36229160 36229397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTGGCTGCTGGGGCCGCTGTGCCTGCTGCTGAGCAGCGCCGCGGAGAGCCAGCTGCTCCCCGGGAACA
ACTTCACCAATGAGTGCAACATACCAGGCAACTTCATGTGCAGCAATGGACGGTGCATCCCGGGCGCCTG
GCAGTGTGACGGGCTGCCTGACTGCTTCGACAAGAGTGATGAGAAGGAGTGCCCCAAGGCTAAGTCGAAA
TGTGGCCCAACCTTCTTCCCCTGTGCCAGCGGCATCCATTGCATCATTGGTCGCTTCCGGTGCAATGGGT
TTGAGGACTGTCCCGATGGCAGCGATGAAGAGAACTGCACAGCAAACCCTCTGCTTTGCTCCACCGCCCG
CTACCACTGCAAGAACGGCCTCTGTATTGACAAGAGCTTCATCTGCGATGGACAGAATAACTGTCAAGAC
AACAGTGATGAGGAAAGCTGTGAAAGTTCTCAAGAACCCGGCAGTGGGCAGGTGTTTGTGACTTCAGAGA
ACCAACTTGTGTATTACCCCAGCATCACCTATGCCATCATCGGCAGCTCCGTCATTTTTGTGCTGGTGGT
GGCCCTGCTGGCACTGGTCTTGCACCACCAGCGGAAGCGGAACAACCTCATGACGCTGCCCGTGCACCGG
CTGCAGCACCCTGTGCTGCTGTCCCGCCTGGTGGTCCTGGACCACCCCCACCACTGCAACGTCACCTACA
ACGTCAATAATGGCATCCAGTATGTGGCCAGCCAGGCGGAGCAGAATGCGTCGGAAGTAGGCTCCCCACC
CTCCTACTCCGAGGCCTTGCTGGACCAGAGGCCTGCGTGGTATGACCTTCCTCCACCGCCCTACTCTTCT
GACACGGAATCTCTGAACCAAGCCGACCTGCCCCCCTACCGCTCCCGGTCCGGGAGTGCCAACAGTGCCA
GCTCCCAGGCAGCCAGCAGCCTCCTGAGCGTGGAAGACACCAGCCACAGCCCGGGGCAGCCTGGCCCCCA
GGAGGGCACTGCTGAGCCCAGGGACTCTGAGCCCAGCCAGGGCACTGAAGAAGTATAA

Translation (345 aa):
MWLLGPLCLLLSSAAESQLLPGNNFTNECNIPGNFMCSNGRCIPGAWQCDGLPDCFDKSDEKECPKAKSK
CGPTFFPCASGIHCIIGRFRCNGFEDCPDGSDEENCTANPLLCSTARYHCKNGLCIDKSFICDGQNNCQD
NSDEESCESSQEPGSGQVFVTSENQLVYYPSITYAIIGSSVIFVLVVALLALVLHHQRKRNNLMTLPVHR
LQHPVLLSRLVVLDHPHHCNVTYNVNNGIQYVASQAEQNASEVGSPPSYSEALLDQRPAWYDLPPPPYSS
DTESLNQADLPPYRSRSGSANSASSQAASSLLSVEDTSHSPGQPGPQEGTAEPRDSEPSQGTEEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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