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Report for CCDS41666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41666.1 Public Homo sapiens 11 DNAJC4 24 110 108 CCDS HistoryNCBI Gene:3338Re-query CCDS DB by CCDS ID:41666.1Re-query CCDS DB by GeneID:3338See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321685.7 ENSP00000396896.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000321685.7Link to Ensembl Protein Viewer:ENSP00000396896.2Re-query CCDS DB by Nucleotide ID:ENST00000321685Re-query CCDS DB by Protein ID:ENSP00000396896
Original member Current member EBI ENST00000628077.3 ENSP00000486499.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000628077.3Link to Ensembl Protein Viewer:ENSP00000486499.2Re-query CCDS DB by Nucleotide ID:ENST00000628077Re-query CCDS DB by Protein ID:ENSP00000486499
Original member Current member NCBI NM_005528.4 NP_005519.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005528.4Link to Protein Sequence:NP_005519.2Re-query CCDS DB by Nucleotide ID:NM_005528Re-query CCDS DB by Protein ID:NP_005519Link to BLAST:NP_005519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005519.2 241 Q9NNZ3 241 100% 0 0

Chromosomal Locations for CCDS 41666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64230855 64230940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64231871 64231964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64232430 64232614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64232704 64232865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64233894 64233980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64234073 64234184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGCCGCCCTTACTGCCCCTGCGCCTGTGCCGGCTGTGGCCCCGCAACCCTCCCTCCCGGCTCCTCGGAG
CGGCCGCCGGGCAGCGGTCCAGACCCAGTACTTATTATGAACTGTTGGGGGTGCATCCTGGTGCCAGCAC
TGAGGAAGTTAAACGAGCTTTCTTCTCCAAGTCCAAAGAGCTGCACCCAGACCGGGACCCTGGGAACCCA
AGCCTGCACAGCCGCTTTGTGGAGCTGAGCGAGGCATACCGTGTGCTCAGCCGTGAGCAGAGCCGCCGCA
GCTATGATGACCAGCTCCGCTCAGGTAGTCCCCCAAAGTCTCCACGAACCACAGTCCATGACAAGTCTGC
CCACCAAACACACAGCTCCTGGACACCCCCCAACGCACAGTACTGGTCCCAGTTTCACAGCGTGAGGCCA
CAGGGGCCCCAGTTGAGGCAGCAGCAACACAAACAAAACAAACAAGTGCTGGGGTACTGCCTCCTCCTCA
TGCTGGCGGGCATGGGCCTGCACTACATTGCCTTCAGGAAGGTGAAGCAGATGCACCTTAACTTCATGGA
TGAAAAGGATCGGATCATCACAGCCTTCTACAACGAAGCCCGGGCACGGGCCAGGGCCAACAGAGGCATC
CTTCAGCAGGAGCGACAACGGCTAGGGCAGCGGCAGCCGCCACCATCCGAGCCAACCCAAGGCCCCGAGA
TCGTGCCCCGGGGCGCCGGCCCCTGA

Translation (241 aa):
MPPLLPLRLCRLWPRNPPSRLLGAAAGQRSRPSTYYELLGVHPGASTEEVKRAFFSKSKELHPDRDPGNP
SLHSRFVELSEAYRVLSREQSRRSYDDQLRSGSPPKSPRTTVHDKSAHQTHSSWTPPNAQYWSQFHSVRP
QGPQLRQQQHKQNKQVLGYCLLLMLAGMGLHYIAFRKVKQMHLNFMDEKDRIITAFYNEARARARANRGI
LQQERQRLGQRQPPPSEPTQGPEIVPRGAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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