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Report for CCDS11956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11956.1 Public Homo sapiens 18 C18orf54 24 110 108 CCDS HistoryNCBI Gene:162681Re-query CCDS DB by CCDS ID:11956.1Re-query CCDS DB by GeneID:162681See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300091.5 ENSP00000300091.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000300091.5Link to Ensembl Protein Viewer:ENSP00000300091.5Re-query CCDS DB by Nucleotide ID:ENST00000300091Re-query CCDS DB by Protein ID:ENSP00000300091
Original member Current member NCBI NM_173529.6 NP_775800.3 Accepted alive Link to Nucleotide Sequence:NM_173529.6Link to Protein Sequence:NP_775800.3Re-query CCDS DB by Nucleotide ID:NM_173529Re-query CCDS DB by Protein ID:NP_775800Link to BLAST:NP_775800.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775800.3 372 Q8IYD9-1 372 100% 0 0

Chromosomal Locations for CCDS 11956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 54360573 54360855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54361643 54361948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54362771 54362921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54365719 54365821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54372466 54372597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54374214 54374284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54378174 54378246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCGAAATCAAAGACAAAACATAGACTTTGTTCTCAGGAATCTTCAGTATCTGCCCTGCTGGCAAGCT
GCACCCTGAGTGGTAGTAATTCCTCTAATTCTGATGGCTCGTTTCACTATAAAGATAAGCTGTACAGATC
TGCTTCTCAAGCTCTACAGGCTTATATTGATGATTTTGATCTAGGCCAAATATATCCTGGTGCAAGCACT
GGAAAAATTAACATTGATGAGGATTTTACTAATATGTCACAGTTCTGCAACTATATTTACAAACCAAACA
ATGCTTTTGAAAACCTTGATCACAAAAAGCACTCAAACTTCATATCCTGTAGAAGACACACCGTTAATGA
CATAGACTCCATGAGCCTAACAACTGATGATCTATTAAGACTCCCAGCAGATGGATCATTTTCTTATACT
TATGTTGGACCGAGTCACCGAACGAGCAAGAAAAACAAGAAATGCCGTGGAAGACTGGGTTCATTGGACA
TTGAGAAGAATCCACATTTTCAAGGACCCTACACTTCCATGGGCAAGGATAACTTTGTTACTCCTGTTAT
ACGCTCAAATATAAATGGAAAGCAATGTGGTGACAAAATTGAATTGCTTATCTTGAAGGCCAAGAGAAAT
CTAGAGCAGTGTACTGAAGAATTACCAAAGTCCATGAAAAAGGATGACAGTCCTTGCTCATTAGATAAAC
TTGAAGCAGACAGATCATGGGAAAATATTCCTGTTACTTTCAAATCTCCTGTTCCCGTTAACTCTGATGA
TAGTCCTCAACAAACTTCAAGGGCAAAGAGTGCTAAAGGGGTTCTTGAAGACTTTCTAAATAATGATAAT
CAGAGCTGTACTCTCTCTGGAGGCAAACATCATGGTCCTGTTGAAGCCCTGAAACAAATGTTATTTAACC
TTCAAGCAGTACAAGAACGTTTTAATCAAAATAAGACCACAGATCCAAAAGAAGAGATTAAACAAGTTTC
AGAAGATGATTTCTCTAAATTACAGTTGAAGGAAAGTATGATTCCTATTACTAGGTCACTTCAGAAGGCT
TTGCACCATTTATCTCGCCTGAGAGACCTGGTTGATGATACGAATGGAGAACGGTCACCGAAAATGTGA

Translation (372 aa):
MAKSKTKHRLCSQESSVSALLASCTLSGSNSSNSDGSFHYKDKLYRSASQALQAYIDDFDLGQIYPGAST
GKINIDEDFTNMSQFCNYIYKPNNAFENLDHKKHSNFISCRRHTVNDIDSMSLTTDDLLRLPADGSFSYT
YVGPSHRTSKKNKKCRGRLGSLDIEKNPHFQGPYTSMGKDNFVTPVIRSNINGKQCGDKIELLILKAKRN
LEQCTEELPKSMKKDDSPCSLDKLEADRSWENIPVTFKSPVPVNSDDSPQQTSRAKSAKGVLEDFLNNDN
QSCTLSGGKHHGPVEALKQMLFNLQAVQERFNQNKTTDPKEEIKQVSEDDFSKLQLKESMIPITRSLQKA
LHHLSRLRDLVDDTNGERSPKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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