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Report for CCDS74223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74223.1 Public Homo sapiens 18 C18orf54 24 110 108 CCDS HistoryNCBI Gene:162681Re-query CCDS DB by CCDS ID:74223.1Re-query CCDS DB by GeneID:162681See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74223.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382911.8 ENSP00000372368.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382911.8Link to Ensembl Protein Viewer:ENSP00000372368.4Re-query CCDS DB by Nucleotide ID:ENST00000382911Re-query CCDS DB by Protein ID:ENSP00000372368
Original member Current member EBI ENST00000620105.5 ENSP00000477654.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620105.5Link to Ensembl Protein Viewer:ENSP00000477654.1Re-query CCDS DB by Nucleotide ID:ENST00000620105Re-query CCDS DB by Protein ID:ENSP00000477654
Original member Current member NCBI NM_001288980.2 NP_001275909.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001288980.2Link to Protein Sequence:NP_001275909.1Re-query CCDS DB by Nucleotide ID:NM_001288980Re-query CCDS DB by Protein ID:NP_001275909Link to BLAST:NP_001275909.1
Original member Current member NCBI NM_001288981.2 NP_001275910.1 Accepted alive Link to Nucleotide Sequence:NM_001288981.2Link to Protein Sequence:NP_001275910.1Re-query CCDS DB by Nucleotide ID:NM_001288981Re-query CCDS DB by Protein ID:NP_001275910Link to BLAST:NP_001275910.1
Original member Current member NCBI NM_001370309.1 NP_001357238.1 Accepted alive Link to Nucleotide Sequence:NM_001370309.1Link to Protein Sequence:NP_001357238.1Re-query CCDS DB by Nucleotide ID:NM_001370309Re-query CCDS DB by Protein ID:NP_001357238Link to BLAST:NP_001357238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275909.1 533 Q8IYD9-2 533 100% 0 0
NP_001275910.1 533 Q8IYD9-2 533 100% 0 0
NP_001357238.1 533 Q8IYD9-2 533 100% 0 0

Chromosomal Locations for CCDS 74223.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 54360573 54360855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54361643 54362431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54362771 54362921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54365719 54365821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54372466 54372597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54374214 54374284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54378174 54378246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCGAAATCAAAGACAAAACATAGACTTTGTTCTCAGGAATCTTCAGTATCTGCCCTGCTGGCAAGCT
GCACCCTGAGTGGTAGTAATTCCTCTAATTCTGATGGCTCGTTTCACTATAAAGATAAGCTGTACAGATC
TGCTTCTCAAGCTCTACAGGCTTATATTGATGATTTTGATCTAGGCCAAATATATCCTGGTGCAAGCACT
GGAAAAATTAACATTGATGAGGATTTTACTAATATGTCACAGTTCTGCAACTATATTTACAAACCAAACA
ATGCTTTTGAAAACCTTGATCACAAAAAGCACTCAAACTTCATATCCTGTAGAAGACACACCGTTAATGA
CATAGACTCCATGAGCCTAACAACTGATGATCTATTAAGACTCCCAGCAGATGGATCATTTTCTTATACT
TATGTTGGACCGAGTCACCGAACGAGCAAGAAAAACAAGAAATGCCGTGGAAGACTGGGTTCATTGGACA
TTGAGAAGAATCCACATTTTCAAGGACCCTACACTTCCATGGGCAAGGATAACTTTGTTACTCCTGTTAT
ACGCTCAAATATAAATGGAAAGCAATGTGGTAGGCTGAAAAACCCAAAACTTATGAATAGGACTAATAAT
TGCATTTCTGAATCATCTTTGTCTTTTCCCAAGAAATCGTCTTTCAAGGACAGTTCAGAACACAGTCTTG
AAAAGAATTACCCAAGATGGCTCACTAGCCAGAAATCTGACCTTAATGTTTCAGGGATAACTAGTATACC
TGATTTCAAATACCCAGTCTGGCTGCACAATCAAGACTTGCTACCTGATGCAAATAGTCAAAGGGTTTAT
CAGATATTTAAAGATGATCAGTGTTCCCCTAGACATAGTCATCAGGCACAAGGAACTTCTCGGCTTATCA
ATAAATTAGATTGTTTTGAATATGCTTTTGAACCCTCAAACTTTTCAAATTCCTTGAGTGATGATAAAGA
ATTAGTTAATGAATACAAATGTGATTTTGAACATAGCCAGTGTCAATGTGAGAATCCACTTCTCCCAGGA
CAATCCACAAAGCCATTCAGTGGTGACAAAATTGAATTGCTTATCTTGAAGGCCAAGAGAAATCTAGAGC
AGTGTACTGAAGAATTACCAAAGTCCATGAAAAAGGATGACAGTCCTTGCTCATTAGATAAACTTGAAGC
AGACAGATCATGGGAAAATATTCCTGTTACTTTCAAATCTCCTGTTCCCGTTAACTCTGATGATAGTCCT
CAACAAACTTCAAGGGCAAAGAGTGCTAAAGGGGTTCTTGAAGACTTTCTAAATAATGATAATCAGAGCT
GTACTCTCTCTGGAGGCAAACATCATGGTCCTGTTGAAGCCCTGAAACAAATGTTATTTAACCTTCAAGC
AGTACAAGAACGTTTTAATCAAAATAAGACCACAGATCCAAAAGAAGAGATTAAACAAGTTTCAGAAGAT
GATTTCTCTAAATTACAGTTGAAGGAAAGTATGATTCCTATTACTAGGTCACTTCAGAAGGCTTTGCACC
ATTTATCTCGCCTGAGAGACCTGGTTGATGATACGAATGGAGAACGGTCACCGAAAATGTGA

Translation (533 aa):
MAKSKTKHRLCSQESSVSALLASCTLSGSNSSNSDGSFHYKDKLYRSASQALQAYIDDFDLGQIYPGAST
GKINIDEDFTNMSQFCNYIYKPNNAFENLDHKKHSNFISCRRHTVNDIDSMSLTTDDLLRLPADGSFSYT
YVGPSHRTSKKNKKCRGRLGSLDIEKNPHFQGPYTSMGKDNFVTPVIRSNINGKQCGRLKNPKLMNRTNN
CISESSLSFPKKSSFKDSSEHSLEKNYPRWLTSQKSDLNVSGITSIPDFKYPVWLHNQDLLPDANSQRVY
QIFKDDQCSPRHSHQAQGTSRLINKLDCFEYAFEPSNFSNSLSDDKELVNEYKCDFEHSQCQCENPLLPG
QSTKPFSGDKIELLILKAKRNLEQCTEELPKSMKKDDSPCSLDKLEADRSWENIPVTFKSPVPVNSDDSP
QQTSRAKSAKGVLEDFLNNDNQSCTLSGGKHHGPVEALKQMLFNLQAVQERFNQNKTTDPKEEIKQVSED
DFSKLQLKESMIPITRSLQKALHHLSRLRDLVDDTNGERSPKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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