NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46603.1 Public Homo sapiens 20 TOX2 24 110 108 CCDS HistoryNCBI Gene:84969Re-query CCDS DB by CCDS ID:46603.1Re-query CCDS DB by GeneID:84969See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46603.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341197.9 ENSP00000344724.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341197.9Link to Ensembl Protein Viewer:ENSP00000344724.3Re-query CCDS DB by Nucleotide ID:ENST00000341197Re-query CCDS DB by Protein ID:ENSP00000344724
Original member Current member NCBI NM_001098797.2 NP_001092267.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098797.2Link to Protein Sequence:NP_001092267.1Re-query CCDS DB by Nucleotide ID:NM_001098797Re-query CCDS DB by Protein ID:NP_001092267Link to BLAST:NP_001092267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092267.1 506 Q96NM4-4 506 100% 0 0

Chromosomal Locations for CCDS 46603.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 43914892 43914990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43973367 43973432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44006547 44006792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44051306 44051545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44054299 44054526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44064777 44064857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44065712 44066107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44066730 44066857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44068650 44068686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGGACGTCCGCCTGTACCCCTCGGCGCCCGCGGTGGGCGCGCGGCCCGGGGCCGAGCCGGCCGGCCTGG
CGCACCTGGACTATTACCACGGCGGCAAGTTTGATGGTGACAGTGCCTACGTGGGGATGAGTGACGGAAA
CCCAGAGCTCCTGTCAACCAGCCAGACCTACAACGGCCAGAGCGAGAACAACGAAGACTATGAGATCCCC
CCGATAACACCTCCCAACCTCCCGGAGCCATCCCTCCTGCACCTGGGGGACCACGAAGCCAGCTACCACT
CGCTGTGCCACGGCCTCACCCCCAACGGTCTGCTCCCTGCCTACTCCTATCAGGCCATGGACCTCCCAGC
CATCATGGTGTCCAACATGCTAGCACAGGACAGCCACCTGCTGTCGGGCCAGCTGCCCACGATCCAGGAG
ATGGTCCACTCGGAAGTGGCTGCCTATGACTCGGGCCGGCCCGGGCCCCTGCTGGGTCGCCCGGCAATGC
TGGCCAGCCACATGAGTGCCCTCAGCCAGTCCCAGCTCATCTCGCAGATGGGCATCCGGAGCAGCATCGC
CCACAGCTCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCCCTCCAGCTCCACTCAGGAAGAG
GAGTCGGAAGTGCATTTCAAGATCTCGGGAGAAAAGAGACCTTCAGCCGACCCAGGAAAAAAGGCCAAGA
ACCCGAAGAAGAAGAAAAAGAAGGACCCCAATGAGCCGCAGAAGCCTGTGTCGGCCTACGCACTCTTCTT
CAGAGACACTCAGGCCGCCATCAAGGGTCAGAACCCCAGTGCCACTTTCGGTGACGTGTCCAAAATCGTG
GCCTCCATGTGGGACAGCCTGGGAGAGGAACAGAAGCAGGCCTACAAGAGGAAGACAGAAGCAGCAAAGA
AGGAATATCTGAAGGCCCTGGCAGCCTACCGGGCTAGCCTCGTCTCCAAGAGCTCCCCAGATCAAGGTGA
GACCAAGAGCACTCAGGCAAACCCACCAGCCAAAATGCTCCCACCCAAGCAGCCCATGTATGCCATGCCA
GGCCTGGCCTCCTTCCTGACGCCGTCGGACCTGCAGGCCTTCCGCAGTGGGGCCTCCCCTGCCAGCCTCG
CCCGGACGCTGGGCTCCAAGTCTCTGCTGCCAGGCCTCAGTGCGTCCCCGCCGCCGCCACCCTCCTTCCC
GCTCAGCCCCACACTGCACCAGCAGCTGTCACTGCCCCCTCACGCCCAGGGCGCCCTCCTCAGTCCACCT
GTTAGCATGTCCCCAGCCCCCCAGCCCCCTGTCCTGCCCACCCCCATGGCACTCCAGGTGCAGCTGGCGA
TGAGCCCCTCACCTCCAGGGCCACAGGACTTCCCGCACATCTCTGAGTTCCCCAGCAGCTCGGGATCCTG
CTCACCTGGCCCATCCAACCCCACCAGCAGCGGGGACTGGGACAGCAGCTACCCCAGTGGGGAGTGTGGC
ATCAGCACCTGCAGCCTGCTCCCCAGGGACAAATCGCTCTACCTCACCTAA

Translation (506 aa):
MDVRLYPSAPAVGARPGAEPAGLAHLDYYHGGKFDGDSAYVGMSDGNPELLSTSQTYNGQSENNEDYEIP
PITPPNLPEPSLLHLGDHEASYHSLCHGLTPNGLLPAYSYQAMDLPAIMVSNMLAQDSHLLSGQLPTIQE
MVHSEVAAYDSGRPGPLLGRPAMLASHMSALSQSQLISQMGIRSSIAHSSPSPPGSKSATPSPSSSTQEE
ESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIV
ASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYRASLVSKSSPDQGETKSTQANPPAKMLPPKQPMYAMP
GLASFLTPSDLQAFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQQLSLPPHAQGALLSPP
VSMSPAPQPPVLPTPMALQVQLAMSPSPPGPQDFPHISEFPSSSGSCSPGPSNPTSSGDWDSSYPSGECG
ISTCSLLPRDKSLYLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH