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Report for CCDS13324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13324.1 Public Homo sapiens 20 TOX2 24 110 108 CCDS HistoryNCBI Gene:84969Re-query CCDS DB by CCDS ID:13324.1Re-query CCDS DB by GeneID:84969See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13324.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372999.5 ENSP00000362090.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372999.5Link to Ensembl Protein Viewer:ENSP00000362090.1Re-query CCDS DB by Nucleotide ID:ENST00000372999Re-query CCDS DB by Protein ID:ENSP00000362090
Original member Current member EBI ENST00000423191.6 ENSP00000390278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423191.6Link to Ensembl Protein Viewer:ENSP00000390278.1Re-query CCDS DB by Nucleotide ID:ENST00000423191Re-query CCDS DB by Protein ID:ENSP00000390278
Original member Current member NCBI NM_001098796.2 NP_001092266.1 Accepted alive Link to Nucleotide Sequence:NM_001098796.2Link to Protein Sequence:NP_001092266.1Re-query CCDS DB by Nucleotide ID:NM_001098796Re-query CCDS DB by Protein ID:NP_001092266Link to BLAST:NP_001092266.1
Original member Current member NCBI NM_032883.3 NP_116272.1 Accepted alive Link to Nucleotide Sequence:NM_032883.3Link to Protein Sequence:NP_116272.1Re-query CCDS DB by Nucleotide ID:NM_032883Re-query CCDS DB by Protein ID:NP_116272Link to BLAST:NP_116272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092266.1 464 Q96NM4-3 464 100% 0 0
NP_116272.1 464 Q96NM4-3 464 100% 0 0

Chromosomal Locations for CCDS 13324.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 43973394 43973432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44006547 44006792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44051306 44051545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44054299 44054526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44064777 44064857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44065712 44066107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44066730 44066857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44068650 44068686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGAGTGACGGAAACCCAGAGCTCCTGTCAACCAGCCAGACCTACAACGGCCAGAGCGAGAACAACGAAG
ACTATGAGATCCCCCCGATAACACCTCCCAACCTCCCGGAGCCATCCCTCCTGCACCTGGGGGACCACGA
AGCCAGCTACCACTCGCTGTGCCACGGCCTCACCCCCAACGGTCTGCTCCCTGCCTACTCCTATCAGGCC
ATGGACCTCCCAGCCATCATGGTGTCCAACATGCTAGCACAGGACAGCCACCTGCTGTCGGGCCAGCTGC
CCACGATCCAGGAGATGGTCCACTCGGAAGTGGCTGCCTATGACTCGGGCCGGCCCGGGCCCCTGCTGGG
TCGCCCGGCAATGCTGGCCAGCCACATGAGTGCCCTCAGCCAGTCCCAGCTCATCTCGCAGATGGGCATC
CGGAGCAGCATCGCCCACAGCTCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCCCTCCAGCT
CCACTCAGGAAGAGGAGTCGGAAGTGCATTTCAAGATCTCGGGAGAAAAGAGACCTTCAGCCGACCCAGG
AAAAAAGGCCAAGAACCCGAAGAAGAAGAAAAAGAAGGACCCCAATGAGCCGCAGAAGCCTGTGTCGGCC
TACGCACTCTTCTTCAGAGACACTCAGGCCGCCATCAAGGGTCAGAACCCCAGTGCCACTTTCGGTGACG
TGTCCAAAATCGTGGCCTCCATGTGGGACAGCCTGGGAGAGGAACAGAAGCAGGCCTACAAGAGGAAGAC
AGAAGCAGCAAAGAAGGAATATCTGAAGGCCCTGGCAGCCTACCGGGCTAGCCTCGTCTCCAAGAGCTCC
CCAGATCAAGGTGAGACCAAGAGCACTCAGGCAAACCCACCAGCCAAAATGCTCCCACCCAAGCAGCCCA
TGTATGCCATGCCAGGCCTGGCCTCCTTCCTGACGCCGTCGGACCTGCAGGCCTTCCGCAGTGGGGCCTC
CCCTGCCAGCCTCGCCCGGACGCTGGGCTCCAAGTCTCTGCTGCCAGGCCTCAGTGCGTCCCCGCCGCCG
CCACCCTCCTTCCCGCTCAGCCCCACACTGCACCAGCAGCTGTCACTGCCCCCTCACGCCCAGGGCGCCC
TCCTCAGTCCACCTGTTAGCATGTCCCCAGCCCCCCAGCCCCCTGTCCTGCCCACCCCCATGGCACTCCA
GGTGCAGCTGGCGATGAGCCCCTCACCTCCAGGGCCACAGGACTTCCCGCACATCTCTGAGTTCCCCAGC
AGCTCGGGATCCTGCTCACCTGGCCCATCCAACCCCACCAGCAGCGGGGACTGGGACAGCAGCTACCCCA
GTGGGGAGTGTGGCATCAGCACCTGCAGCCTGCTCCCCAGGGACAAATCGCTCTACCTCACCTAA

Translation (464 aa):
MSDGNPELLSTSQTYNGQSENNEDYEIPPITPPNLPEPSLLHLGDHEASYHSLCHGLTPNGLLPAYSYQA
MDLPAIMVSNMLAQDSHLLSGQLPTIQEMVHSEVAAYDSGRPGPLLGRPAMLASHMSALSQSQLISQMGI
RSSIAHSSPSPPGSKSATPSPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSA
YALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYRASLVSKSS
PDQGETKSTQANPPAKMLPPKQPMYAMPGLASFLTPSDLQAFRSGASPASLARTLGSKSLLPGLSASPPP
PPSFPLSPTLHQQLSLPPHAQGALLSPPVSMSPAPQPPVLPTPMALQVQLAMSPSPPGPQDFPHISEFPS
SSGSCSPGPSNPTSSGDWDSSYPSGECGISTCSLLPRDKSLYLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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