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Report for CCDS47625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47625.1 Public Homo sapiens 7 GNAT3 24 110 108 CCDS HistoryNCBI Gene:346562Re-query CCDS DB by CCDS ID:47625.1Re-query CCDS DB by GeneID:346562See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47625.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398291.4 ENSP00000381339.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398291.4Link to Ensembl Protein Viewer:ENSP00000381339.3Re-query CCDS DB by Nucleotide ID:ENST00000398291Re-query CCDS DB by Protein ID:ENSP00000381339
Original member Current member NCBI NM_001102386.3 NP_001095856.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102386.3Link to Protein Sequence:NP_001095856.1Re-query CCDS DB by Nucleotide ID:NM_001102386Re-query CCDS DB by Protein ID:NP_001095856Link to BLAST:NP_001095856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095856.1 354 A8MTJ3 354 100% 0 0

Chromosomal Locations for CCDS 47625.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80458671 80458861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80462159 80462312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80462502 80462631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80474251 80474379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80478841 80478998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80488535 80488676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80494605 80494647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80511809 80511926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGGAAGTGGAATTAGTTCAGAGAGCAAGGAGTCAGCCAAAAGATCAAAAGAACTGGAGAAAAAGCTTC
AG
GAGGATGCTGAGCGAGATGCAAGAACCGTAAAGCTGCTACTATTAGGAGCAGGAGAATCTGGGAAAAG
T
ACTATTGTTAAACAAATGAAGATCATCCATAAGAATGGTTACAGTGAGCAAGAATGCATGGAGTTCAAA
GCA
GTAATTTACAGTAATACATTGCAATCCATCCTAGCTATTGTGAAAGCCATGACTACCCTTGGAATTG
AT
TATGTAAATCCCAGAAGTGCAGAGGACCAACGACAACTTTATGCAATGGCAAATACCCTGGAAGATGG
T
GGCATGACACCTCAACTGGCTGAGGTAATAAAACGGCTGTGGAGAGATCCAGGAATTCAGGCCTGCTTT
GAA
AGGGCATCTGAATATCAGCTCAATGACTCAGCAGCTTACTACCTTAATGATTTAGATAGAATAACAG
CA
TCTGGGTATGTGCCAAATGAACAAGATGTTCTCCATTCTCGAGTGAAAACGACTGGAATCATTGAAAC
T
CAATTCTCCTTTAAAGACTTGCACTTCAGGATGTTTGATGTAGGTGGACAGAGATCTGAGAGAAAGAAG
TGG
ATTCACTGCTTTGAAGGAGTTACATGCATTATATTTTGTGCTGCACTTAGTGCCTATGACATGGTCC
TC
GTGGAAGACGAAGAAGTGAATAGAATGCATGAAAGCCTTCACCTGTTCAACAGTATCTGTAATCACAA
G
TATTTTTCAACAACCTCCATTGTCCTGTTCCTCAACAAAAAAGATATCTTTCAAGAAAAGGTAACCAAG
GTG
CATCTTAGTATCTGCTTTCCAGAATACACTGGGCCAAATACATTTGAAGATGCAGGAAACTACATCA
AG
AACCAGTTTCTAGACCTGAATTTAAAAAAAGAAGATAAGGAAATTTATTCCCACATGACCTGTGCTAC
T
GACACCCAAAATGTCAAGTTTGTGTTTGACGCAGTTACAGATATAATAATCAAAGAGAATCTAAAAGAC
TGT
GGGCTTTTCTAA


Translation (354 aa):
MGSGISSESKESAKRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSEQECMEFK
A
VIYSNTLQSILAIVKAMTTLGIDYVNPRSA
EDQRQLYAMANTLEDGGMTPQLAEVIKRLWRDPGIQACF
E
RASEYQLNDSAA
YYLNDLDRITASGYVPNEQDVLHSRVKTTGIIETQFSFKDLHFRMFDVGGQRSERKK
W
IHCFEGVTCIIFCAALSAYDMVLVEDEEV
NRMHESLHLFNSICNHKYFSTTSIVLFLNKKDIFQEKVTK
V
HLSICFPEYT
GPNTFEDAGNYIKNQFLDLNLKKEDKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD
C
GLF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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