PssmFinalData
Defined in file scoremat.asn
C++ class: CPssmFinalData
PssmFinalData ::= SEQUENCE {
-- PSSM's scores
scores SEQUENCE OF INTEGER,
-- Karlin & Altschul parameter produced during the PSSM's calculation
lambda REAL,
-- Karlin & Altschul parameter produced during the PSSM's calculation
kappa REAL,
-- Karlin & Altschul parameter produced during the PSSM's calculation
h REAL,
-- scaling factor used to obtain more precision when building the PSSM.
-- (i.e.: scores are scaled by this value). By default, PSI-BLAST's PSSM
-- engine generates PSSMs which are not scaled-up, however, if PSI-BLAST is
-- given a PSSM which contains a scaled-up PSSM (indicated by having a
-- scalingFactor greater than 1), then it will scale down the PSSM to
-- perform the initial stages of the search with it.
-- N.B.: When building RPS-BLAST databases, if formatrpsdb is provided
-- scaled-up PSSMs, it will ensure that all PSSMs used to build the
-- RPS-BLAST database are scaled by the same factor (otherwise, RPS-BLAST
-- will silently produce incorrect results).
scalingFactor INTEGER DEFAULT 1,
-- Karlin & Altschul parameter produced during the PSSM's calculation
lambdaUngapped REAL OPTIONAL,
-- Karlin & Altschul parameter produced during the PSSM's calculation
kappaUngapped REAL OPTIONAL,
-- Karlin & Altschul parameter produced during the PSSM's calculation
hUngapped REAL OPTIONAL,
-- Word score threshold
wordScoreThreshold REAL OPTIONAL
}