NCBI C++ ToolKit
Seq_entry_.cpp
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1 /* $Id$
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3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
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10  * thus cannot be copyrighted. This software/database is freely available
11  * to the public for use. The National Library of Medicine and the U.S.
12  * Government have not placed any restriction on its use or reproduction.
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20  * purpose.
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22  * Please cite the author in any work or product based on this material.
23  *
24  * ===========================================================================
25  *
26  * File Description:
27  * This code was generated by application DATATOOL
28  * using the following specifications:
29  * 'seqset.asn'.
30  *
31  * ATTENTION:
32  * Don't edit or commit this file into CVS as this file will
33  * be overridden (by DATATOOL) without warning!
34  * ===========================================================================
35  */
36 
37 // standard includes
38 #include <ncbi_pch.hpp>
39 #include <serial/serialimpl.hpp>
40 
41 // generated includes
43 #include <objects/seq/Bioseq.hpp>
46 
47 BEGIN_objects_SCOPE // namespace ncbi::objects::
48 
49 
50 // generated classes
51 
53 {
54  if ( m_choice != e_not_set )
56 }
57 
59 {
60  switch ( m_choice ) {
61  case e_Seq:
62  case e_Set:
63  m_object->RemoveReference();
64  break;
65  default:
66  break;
67  }
69 }
70 
71 void CSeq_entry_Base::DoSelect(E_Choice index, NCBI_NS_NCBI::CObjectMemoryPool* pool)
72 {
73  switch ( index ) {
74  case e_Seq:
75  (m_object = new(pool) ncbi::objects::CBioseq())->AddReference();
76  break;
77  case e_Set:
78  (m_object = new(pool) ncbi::objects::CBioseq_set())->AddReference();
79  break;
80  default:
81  break;
82  }
83  m_choice = index;
84 }
85 
86 const char* const CSeq_entry_Base::sm_SelectionNames[] = {
87  "not set",
88  "seq",
89  "set"
90 };
91 
93 {
94  return NCBI_NS_NCBI::CInvalidChoiceSelection::GetName(index, sm_SelectionNames, sizeof(sm_SelectionNames)/sizeof(sm_SelectionNames[0]));
95 }
96 
98 {
99  throw NCBI_NS_NCBI::CInvalidChoiceSelection(DIAG_COMPILE_INFO, this, m_choice, index, sm_SelectionNames, sizeof(sm_SelectionNames)/sizeof(sm_SelectionNames[0]));
100 }
101 
103 {
105  return *static_cast<const TSeq*>(m_object);
106 }
107 
109 {
111  return *static_cast<TSeq*>(m_object);
112 }
113 
115 {
116  TSeq* ptr = &value;
117  if ( m_choice != e_Seq || m_object != ptr ) {
118  ResetSelection();
119  (m_object = ptr)->AddReference();
120  m_choice = e_Seq;
121  }
122 }
123 
125 {
127  return *static_cast<const TSet*>(m_object);
128 }
129 
131 {
133  return *static_cast<TSet*>(m_object);
134 }
135 
137 {
138  TSet* ptr = &value;
139  if ( m_choice != e_Set || m_object != ptr ) {
140  ResetSelection();
141  (m_object = ptr)->AddReference();
142  m_choice = e_Set;
143  }
144 }
145 
146 // helper methods
147 
148 // type info
150 {
151  SET_CHOICE_MODULE("NCBI-Seqset");
152  ADD_NAMED_REF_CHOICE_VARIANT("seq", m_object, CBioseq);
153  ADD_NAMED_REF_CHOICE_VARIANT("set", m_object, CBioseq_set);
154  info->CodeVersion(22400);
155  info->DataSpec(ncbi::EDataSpec::eASN);
156 }
158 
159 // constructor
161  : m_choice(e_not_set)
162 {
163 }
164 
165 // destructor
167 {
168  Reset();
169 }
170 
171 
172 
173 END_objects_SCOPE // namespace ncbi::objects::
174 
176 
BEGIN_NAMED_BASE_CHOICE_INFO("Seq-entry", CSeq_entry)
Definition: Seq_entry_.cpp:149
Definition: Seq_entry.hpp:56
string
Definition: cgiapp.hpp:687
#define DIAG_COMPILE_INFO
Make compile time diagnostic information object to use in CNcbiDiag and CException.
Definition: ncbidiag.hpp:170
#define ADD_NAMED_REF_CHOICE_VARIANT(MemberAlias, MemberName, ClassName)
Definition: serialimpl.hpp:400
#define END_CHOICE_INFO
Definition: serialimpl.hpp:506
#define SET_CHOICE_MODULE(ModuleName)
Definition: serialimpl.hpp:500
@ eDoNotResetVariant
Definition: serialbase.hpp:78
void AddReference(void) const
Add reference to object.
Definition: ncbiobj.hpp:489
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
const TSeq & GetSeq(void) const
Get the variant data.
Definition: Seq_entry_.cpp:102
TSet & SetSet(void)
Select the variant.
Definition: Seq_entry_.cpp:130
E_Choice m_choice
Definition: Seq_entry_.hpp:209
void CheckSelected(E_Choice index) const
Verify selection, throw exception if it differs from the expected.
Definition: Seq_entry_.hpp:234
E_Choice
Choice variants.
Definition: Seq_entry_.hpp:87
void ThrowInvalidSelection(E_Choice index) const
Throw 'InvalidSelection' exception.
Definition: Seq_entry_.cpp:97
const TSet & GetSet(void) const
Get the variant data.
Definition: Seq_entry_.cpp:124
static const char *const sm_SelectionNames[]
Definition: Seq_entry_.hpp:213
static string SelectionName(E_Choice index)
Retrieve selection name (for diagnostic purposes).
Definition: Seq_entry_.cpp:92
void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)
Definition: Seq_entry_.cpp:71
void Select(E_Choice index, EResetVariant reset=eDoResetVariant)
Select the requested variant if needed.
NCBI_NS_NCBI::CSerialObject * m_object
Definition: Seq_entry_.hpp:215
virtual ~CSeq_entry_Base(void)
Definition: Seq_entry_.cpp:166
virtual void ResetSelection(void)
Reset the selection (set it to e_not_set).
Definition: Seq_entry_.cpp:58
virtual void Reset(void)
Reset the whole object.
Definition: Seq_entry_.cpp:52
TSeq & SetSeq(void)
Select the variant.
Definition: Seq_entry_.cpp:108
@ e_not_set
No variant selected.
Definition: Seq_entry_.hpp:88
@ e_not_set
static MDB_envinfo info
Definition: mdb_load.c:37
const GenericPointer< typename T::ValueType > T2 value
Definition: pointer.h:1227
Modified on Wed Apr 24 14:19:43 2024 by modify_doxy.py rev. 669887