Search Toolkit Book for CBestFeatFinder
#include "best_feat_finder.hpp"
(Private to src/objtools/readers.)
Collaboration diagram for CBestFeatFinder:
Classes | |
| class | CSeqLocSort |
Public Member Functions | |
| CBestFeatFinder (void) | |
| bool | AddFeat (const CSeq_feat &new_cds) |
| CConstRef< CSeq_feat > | FindBestFeatForLoc (const CSeq_loc &sought_loc) const |
| CConstRef< CSeq_feat > | FindBestFeatForLoc (const int start_pos, const int stop_pos) const |
Private Types | |
| typedef std::multimap< CConstRef< CSeq_loc >, CConstRef< CSeq_feat >, CSeqLocSort > | TLocToFeatMap |
Private Attributes | |
| TLocToFeatMap | loc_to_feat_map |
Detailed Description
Definition at line 46 of file best_feat_finder.hpp.
Member Typedef Documentation
◆ TLocToFeatMap
|
private |
Definition at line 68 of file best_feat_finder.hpp.
Constructor & Destructor Documentation
◆ CBestFeatFinder()
| CBestFeatFinder::CBestFeatFinder | ( | void | ) |
Definition at line 43 of file best_feat_finder.cpp.
Member Function Documentation
◆ AddFeat()
Definition at line 48 of file best_feat_finder.cpp.
References CSeq_feat_Base::GetLocation(), and loc_to_feat_map.
Referenced by CFeatureTableReader_Imp::ReadSequinFeatureTable().
◆ FindBestFeatForLoc() [1/2]
Definition at line 62 of file best_feat_finder.cpp.
References eExtreme_Positional, CSeq_loc::GetStart(), and CSeq_loc::GetStop().
◆ FindBestFeatForLoc() [2/2]
| CConstRef< CSeq_feat > CBestFeatFinder::FindBestFeatForLoc | ( | const int | start_pos, |
| const int | stop_pos | ||
| ) | const |
Definition at line 76 of file best_feat_finder.cpp.
References eExtreme_Positional, loc_to_feat_map, and CSeq_loc::SetInt().
Member Data Documentation
◆ loc_to_feat_map
|
private |
Definition at line 69 of file best_feat_finder.hpp.
Referenced by AddFeat(), and FindBestFeatForLoc().
The documentation for this class was generated from the following files:
- src/objtools/readers/best_feat_finder.hpp
- src/objtools/readers/best_feat_finder.cpp
